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基于熔解曲线的三重 Eva Green 实时荧光定量 PCR 检测方法的建立,用于同时检测三种虾类病原体

Development of a Melting Curve-Based Triple Eva Green Real-Time PCR Assay for Simultaneous Detection of Three Shrimp Pathogens.

作者信息

Dong Xuan, Chen Yujin, Lou Haoyu, Wang Guohao, Zhou Chengyan, Wang Liying, Li Xuan, Luo Jingfei, Huang Jie

机构信息

State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao Key Laboratory of Mariculture Epidemiology and Biosecurity, Qingdao 266071, China.

Jiangsu Shufeng Aquatic Seed Industry Co., Ltd., Gaoyou 255654, China.

出版信息

Animals (Basel). 2024 Feb 11;14(4):592. doi: 10.3390/ani14040592.

DOI:10.3390/ani14040592
PMID:38396559
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10886148/
Abstract

Infections with (EHP), infectious hypodermal and hematopoietic necrosis virus (IHHNV), and Decapod iridescent virus 1 (DIV1) pose significant challenges to the shrimp industry. Here, a melting curve-based triple real-time PCR assay based on the fluorescent dye Eva Green was established for the simultaneous detection of EHP, IHHNV, and DIV1. The assay showed high specificity, sensitivity, and reproducibility. A total of 190 clinical samples from Shandong, Jiangsu, Sichuan, Guangdong, and Hainan provinces in China were evaluated by the triple Eva Green real-time PCR assay. The positive rates of EHP, IHHNV, and DIV1 were 10.5%, 18.9%, and 44.2%, respectively. The samples were also evaluated by TaqMan qPCR assays for EHP, DIV1, and IHHNV, and the concordance rate was 100%. This illustrated that the newly developed triple Eva Green real-time PCR assay can provide an accurate method for the simultaneous detection of three shrimp pathogens.

摘要

对虾肝胰腺细小病毒(EHP)、传染性皮下和造血组织坏死病毒(IHHNV)以及十足目虹彩病毒1型(DIV1)感染给对虾养殖业带来了重大挑战。在此,基于荧光染料Eva Green建立了一种基于熔解曲线的三重实时荧光定量PCR检测方法,用于同时检测EHP、IHHNV和DIV1。该检测方法具有高特异性、高灵敏度和高重复性。采用Eva Green三重实时荧光定量PCR检测方法对来自中国山东、江苏、四川、广东和海南五省的190份临床样本进行了评估。EHP、IHHNV和DIV1的阳性率分别为10.5%、18.9%和44.2%。还采用TaqMan荧光定量PCR检测方法对样本中的EHP、DIV1和IHHNV进行了评估,符合率为100%。这表明新开发的Eva Green三重实时荧光定量PCR检测方法可为同时检测三种对虾病原体提供一种准确的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/8a5214f78c0d/animals-14-00592-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/2d0a14bc164e/animals-14-00592-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/98ad73519383/animals-14-00592-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/8a5214f78c0d/animals-14-00592-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/2d0a14bc164e/animals-14-00592-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/98ad73519383/animals-14-00592-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3298/10886148/8a5214f78c0d/animals-14-00592-g003.jpg

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本文引用的文献

1
(EHP) Infection Alters the Metabolic Processes and Induces Oxidative Stress in .(EHP)感染改变代谢过程并在……中诱导氧化应激。
Animals (Basel). 2023 Nov 27;13(23):3661. doi: 10.3390/ani13233661.
2
Development of a Melting-Curve-Based Multiplex Real-Time PCR Assay for the Simultaneous Detection of Viruses Causing Respiratory Infection.基于熔解曲线的多重实时荧光定量PCR检测方法的建立,用于同时检测引起呼吸道感染的病毒
Microorganisms. 2023 Nov 2;11(11):2692. doi: 10.3390/microorganisms11112692.
3
Development of a duplex PCR for the simultaneous detection of EHP and IHHNV and analysis of the correlation between these two pathogens.
一种用于同时检测对虾肝胰腺细小病毒(EHP)和传染性皮下及造血组织坏死病毒(IHHNV)的双重PCR技术的开发以及这两种病原体之间相关性的分析。
J Invertebr Pathol. 2023 Nov;201:108013. doi: 10.1016/j.jip.2023.108013. Epub 2023 Nov 2.
4
The emerging pathogen Enterocytozoon hepatopenaei drives a degenerative cyclic pattern in the hepatopancreas microbiome of the shrimp (Penaeus vannamei).新兴病原体对虾微孢子虫(Enterocytozoon hepatopenaei)导致对虾(凡纳滨对虾,Penaeus vannamei)肝胰腺微生物组发生退行性循环模式。
Sci Rep. 2022 Aug 30;12(1):14766. doi: 10.1038/s41598-022-19127-2.
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Establishment of a real-time Recombinase Polymerase Amplification (RPA) for the detection of decapod iridescent virus 1 (DIV1).建立用于检测十足目虹彩病毒1(DIV1)的实时重组酶聚合酶扩增(RPA)方法。
J Virol Methods. 2022 Feb;300:114377. doi: 10.1016/j.jviromet.2021.114377. Epub 2021 Nov 23.
6
Rapid detection of Decapod iridescent virus 1 (DIV1) by recombinase polymerase amplification.利用重组酶聚合酶扩增快速检测十足目虹彩病毒 1 型(DIV1)。
J Virol Methods. 2022 Feb;300:114362. doi: 10.1016/j.jviromet.2021.114362. Epub 2021 Nov 18.
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Rapid Detection of Infection in Shrimp With a Real-Time Isothermal Recombinase Polymerase Amplification Assay.利用实时等温重组酶聚合酶扩增分析法快速检测虾类感染
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Integrated qPCR and Staining Methods for Detection and Quantification of in Shrimp .用于对虾中[具体物质]检测和定量的整合式定量聚合酶链反应及染色方法
Microorganisms. 2020 Sep 7;8(9):1366. doi: 10.3390/microorganisms8091366.
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A TaqMan probe based real-time PCR for the detection of Decapod iridescent virus 1.基于 TaqMan 探针的实时 PCR 检测方法用于检测十足目虹彩病毒 1。
J Invertebr Pathol. 2020 Jun;173:107367. doi: 10.1016/j.jip.2020.107367. Epub 2020 Apr 3.
10
Description of a Natural Infection with Decapod Iridescent Virus 1 in Farmed Giant Freshwater Prawn, .描述一种养殖的巨型淡水对虾感染十足目虹彩病毒 1 的自然感染情况。
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