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螺环吖啶类化合物作为蝶呤还原酶 1 抑制剂:计算机靶点筛选和体外研究。

Spiro-Acridine Compound as a Pteridine Reductase 1 Inhibitor: in silico Target Fishing and in vitro Studies.

机构信息

Bioinformatics Multidisciplinary Environment, Federal University of Rio Grande do Norte, University Campus I-Lagoa Nova, Natal, RN, 59078-970.

Department of Pharmacy, Federal University of Bahia, University Campus Ondina - Ondina, Salvador, BA, 40170-110.

出版信息

ChemMedChem. 2024 Jun 3;19(11):e202300545. doi: 10.1002/cmdc.202300545. Epub 2024 Mar 25.

Abstract

Among the many neglected tropical diseases, leishmaniasis ranks second in mortality rate and prevalence. In a previous study, acridine derivatives were synthesized and tested for their antileishmanial activity against L. chagasi. The most active compound identified in that study (1) showed a single digit IC value against the parasite (1.10 μg/mL), but its macromolecular target remained unknown. Aiming to overcome this limitation, this work exploited inverse virtual screening to identify compound 1's putative molecular mechanism of action. In vitro assays confirmed that compound 1 binds to Leishmania chagasi pteridine reductase 1 (LcPTR1), with moderate affinity (Kd=33,1 μM), according to differential scanning fluorimetry assay. Molecular dynamics simulations confirm the stability of LcPTR1-compound 1 complex, supporting a competitive mechanism of action. Therefore, the workflow presented in this work successfully identified PTR1 as a macromolecular target for compound 1, allowing the designing of novel potent antileishmanial compounds.

摘要

在众多被忽视的热带病中,利什曼病的死亡率和患病率位居第二。在之前的一项研究中,合成了吖啶衍生物,并测试了它们对 L. chagasi 的抗利什曼原虫活性。在该研究中发现的最活跃的化合物(1)对寄生虫的 IC 值为个位数(1.10μg/ml),但其大分子靶标仍然未知。为了克服这一限制,本工作利用反向虚拟筛选来确定化合物 1 的潜在作用机制。根据差示扫描荧光法测定,体外试验证实化合物 1 与利什曼原虫喋呤还原酶 1(LcPTR1)结合,具有中等亲和力(Kd=33.1μM)。分子动力学模拟证实了 LcPTR1-化合物 1 复合物的稳定性,支持竞争性作用机制。因此,本工作中提出的工作流程成功地将 PTR1 鉴定为化合物 1 的大分子靶标,从而能够设计新型有效的抗利什曼原虫化合物。

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