• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

F87侧链的错误包装会在转甲状腺素蛋白四聚体的亚基界面引发促进聚集的构象波动。

Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer.

作者信息

Sun Xun, Ferguson James A, Yang Ke, Stanfield Robyn L, Dyson H Jane, Wright Peter E

机构信息

Department of Integrative Structural and Computational Biology and Skaggs Institute of Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, U.S.

出版信息

bioRxiv. 2024 Mar 1:2024.02.26.582172. doi: 10.1101/2024.02.26.582172.

DOI:10.1101/2024.02.26.582172
PMID:38464206
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10925235/
Abstract

Aberrant formation and deposition of human transthyretin (TTR) aggregates causes transthyretin amyloidosis. To initialize aggregation, transthyretin tetramers must first dissociate into monomers that partially unfold to promote entry into the aggregation pathway. The native TTR tetramer (T) is stabilized by docking of the F87 sidechain into an interfacial cavity enclosed by several hydrophobic residues including A120. We have previously shown that an alternative tetramer (T*) with mispacked F87 sidechains is more prone to dissociation and aggregation than the native T state. However, the molecular basis for the reduced stability in T* remains unclear. Here we report characterization of the A120L mutant, where steric hindrance is introduced into the F87 binding site. The X-ray structure of A120L shows that the F87 sidechain is displaced from its docking site across the subunit interface. In A120S, a naturally occurring pathogenic mutant that is less aggregation-prone than A120L, the F87 sidechain is correctly docked, as in the native TTR tetramer. Nevertheless, F-NMR aggregation assays show an elevated population of a monomeric aggregation intermediate in A120S relative to a control containing the native A120, due to accelerated tetramer dissociation and slowed monomer tetramerization. The mispacking of the F87 sidechain is associated with enhanced exchange dynamics for interfacial residues. At 298 K, the T* populations of various naturally occurring mutants fall between 4-7% (Δ ~ 1.5-1.9 kcal/mol), consistent with the free energy change expected for undocking and solvent exposure of one of the four F87 sidechains in the tetramer (Δ ~ 1.6 kcal/mol). Our data provide a molecular-level picture of the likely universal F87 sidechain mispacking in tetrameric TTR that promotes interfacial conformational dynamics and increases aggregation propensity.

摘要

人转甲状腺素蛋白(TTR)聚集体的异常形成和沉积会导致转甲状腺素蛋白淀粉样变性。为了引发聚集,转甲状腺素蛋白四聚体必须首先解离成单体,这些单体部分展开以促进进入聚集途径。天然的TTR四聚体(T)通过F87侧链对接至由包括A120在内的几个疏水残基包围的界面腔中而得以稳定。我们之前已经表明,具有错配F87侧链的替代四聚体(T*)比天然T态更容易解离和聚集。然而,T稳定性降低的分子基础仍不清楚。在此,我们报告了A120L突变体的特征,该突变体在F87结合位点引入了空间位阻。A120L的X射线结构表明,F87侧链从其跨亚基界面的对接位点移位。在A120S中,一种天然存在的致病性突变体,其聚集倾向低于A120L,F87侧链如在天然TTR四聚体中一样正确对接。尽管如此,F-NMR聚集分析表明,相对于含有天然A120的对照,A120S中单体聚集中间体的数量增加,这是由于四聚体解离加速和单体四聚化减慢所致。F87侧链的错配与界面残基的交换动力学增强有关。在298 K时,各种天然存在的突变体的T群体介于4-7%之间(Δ1.5-1.9 kcal/mol),这与四聚体中四个F87侧链之一的脱扣和溶剂暴露预期的自由能变化(Δ1.6 kcal/mol)一致。我们的数据提供了一个分子水平的图景,展示了四聚体TTR中可能普遍存在的F87侧链错配,这种错配促进了界面构象动力学并增加了聚集倾向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/ccc40f921ef9/nihpp-2024.02.26.582172v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/abac49ddc7ac/nihpp-2024.02.26.582172v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/e6427f2ad91f/nihpp-2024.02.26.582172v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/c2e52ec45258/nihpp-2024.02.26.582172v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/d049e0f207de/nihpp-2024.02.26.582172v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/ad0dfdd0d496/nihpp-2024.02.26.582172v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/53f0a6ce21fc/nihpp-2024.02.26.582172v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/ccc40f921ef9/nihpp-2024.02.26.582172v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/abac49ddc7ac/nihpp-2024.02.26.582172v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/e6427f2ad91f/nihpp-2024.02.26.582172v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/c2e52ec45258/nihpp-2024.02.26.582172v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/d049e0f207de/nihpp-2024.02.26.582172v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/ad0dfdd0d496/nihpp-2024.02.26.582172v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/53f0a6ce21fc/nihpp-2024.02.26.582172v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aece/10925235/ccc40f921ef9/nihpp-2024.02.26.582172v1-f0007.jpg

相似文献

1
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer.F87侧链的错误包装会在转甲状腺素蛋白四聚体的亚基界面引发促进聚集的构象波动。
bioRxiv. 2024 Mar 1:2024.02.26.582172. doi: 10.1101/2024.02.26.582172.
2
Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer.F87 侧链的包装错误导致转甲状腺素四聚体亚基界面中促进聚集的构象波动。
Protein Sci. 2024 Sep;33(9):e5101. doi: 10.1002/pro.5101.
3
Mispacking of the Phe87 Side Chain Reduces the Kinetic Stability of Human Transthyretin.苯丙氨酸87侧链的错误包装降低了人转甲状腺素蛋白的动力学稳定性。
Biochemistry. 2018 Dec 26;57(51):6919-6922. doi: 10.1021/acs.biochem.8b01046. Epub 2018 Dec 14.
4
Kinetic analysis of the multistep aggregation pathway of human transthyretin.人甲状腺素运载蛋白多步骤聚集途径的动力学分析。
Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6201-E6208. doi: 10.1073/pnas.1807024115. Epub 2018 Jun 18.
5
Probing the Dissociation Pathway of a Kinetically Labile Transthyretin Mutant.探究一种动力学不稳定转甲状腺素蛋白突变体的离解途径。
J Am Chem Soc. 2024 Jan 10;146(1):532-542. doi: 10.1021/jacs.3c10083. Epub 2023 Dec 22.
6
A transthyretin monomer intermediate undergoes local unfolding and transient interaction with oligomers in a kinetically concerted aggregation pathway.转甲状腺素蛋白单体中间体在聚合途径中经历局部展开和与寡聚物的瞬时相互作用。
J Biol Chem. 2022 Aug;298(8):102162. doi: 10.1016/j.jbc.2022.102162. Epub 2022 Jun 18.
7
Thermodynamic Stability and Aggregation Kinetics of EF Helix and EF Loop Variants of Transthyretin.转甲状腺素蛋白 EF 螺旋和 EF 环变体的热力学稳定性和聚集动力学。
Biochemistry. 2021 Mar 16;60(10):756-764. doi: 10.1021/acs.biochem.1c00073. Epub 2021 Mar 1.
8
Structural insight into pH-induced conformational changes within the native human transthyretin tetramer.对天然人甲状腺素运载蛋白四聚体内pH诱导的构象变化的结构洞察。
J Mol Biol. 2008 Oct 24;382(5):1157-67. doi: 10.1016/j.jmb.2008.07.029. Epub 2008 Jul 16.
9
Tetramer dissociation and monomer partial unfolding precedes protofibril formation in amyloidogenic transthyretin variants.在淀粉样变甲状腺素运载蛋白变体中,四聚体解离和单体部分解折叠先于原纤维形成。
J Biol Chem. 2001 Jul 20;276(29):27207-13. doi: 10.1074/jbc.M101024200. Epub 2001 Apr 16.
10
Disease-associated mutations impacting BC-loop flexibility trigger long-range transthyretin tetramer destabilization and aggregation.与疾病相关的突变会影响 BC 环的柔韧性,从而引发甲状腺素运载蛋白四聚体的远程不稳定性和聚集。
J Biol Chem. 2021 Sep;297(3):101039. doi: 10.1016/j.jbc.2021.101039. Epub 2021 Jul 31.