Sun Xun, Ferguson James A, Yang Ke, Stanfield Robyn L, Dyson H Jane, Wright Peter E
Department of Integrative Structural and Computational Biology and Skaggs Institute of Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, U.S.
bioRxiv. 2024 Mar 1:2024.02.26.582172. doi: 10.1101/2024.02.26.582172.
Aberrant formation and deposition of human transthyretin (TTR) aggregates causes transthyretin amyloidosis. To initialize aggregation, transthyretin tetramers must first dissociate into monomers that partially unfold to promote entry into the aggregation pathway. The native TTR tetramer (T) is stabilized by docking of the F87 sidechain into an interfacial cavity enclosed by several hydrophobic residues including A120. We have previously shown that an alternative tetramer (T*) with mispacked F87 sidechains is more prone to dissociation and aggregation than the native T state. However, the molecular basis for the reduced stability in T* remains unclear. Here we report characterization of the A120L mutant, where steric hindrance is introduced into the F87 binding site. The X-ray structure of A120L shows that the F87 sidechain is displaced from its docking site across the subunit interface. In A120S, a naturally occurring pathogenic mutant that is less aggregation-prone than A120L, the F87 sidechain is correctly docked, as in the native TTR tetramer. Nevertheless, F-NMR aggregation assays show an elevated population of a monomeric aggregation intermediate in A120S relative to a control containing the native A120, due to accelerated tetramer dissociation and slowed monomer tetramerization. The mispacking of the F87 sidechain is associated with enhanced exchange dynamics for interfacial residues. At 298 K, the T* populations of various naturally occurring mutants fall between 4-7% (Δ ~ 1.5-1.9 kcal/mol), consistent with the free energy change expected for undocking and solvent exposure of one of the four F87 sidechains in the tetramer (Δ ~ 1.6 kcal/mol). Our data provide a molecular-level picture of the likely universal F87 sidechain mispacking in tetrameric TTR that promotes interfacial conformational dynamics and increases aggregation propensity.
人转甲状腺素蛋白(TTR)聚集体的异常形成和沉积会导致转甲状腺素蛋白淀粉样变性。为了引发聚集,转甲状腺素蛋白四聚体必须首先解离成单体,这些单体部分展开以促进进入聚集途径。天然的TTR四聚体(T)通过F87侧链对接至由包括A120在内的几个疏水残基包围的界面腔中而得以稳定。我们之前已经表明,具有错配F87侧链的替代四聚体(T*)比天然T态更容易解离和聚集。然而,T稳定性降低的分子基础仍不清楚。在此,我们报告了A120L突变体的特征,该突变体在F87结合位点引入了空间位阻。A120L的X射线结构表明,F87侧链从其跨亚基界面的对接位点移位。在A120S中,一种天然存在的致病性突变体,其聚集倾向低于A120L,F87侧链如在天然TTR四聚体中一样正确对接。尽管如此,F-NMR聚集分析表明,相对于含有天然A120的对照,A120S中单体聚集中间体的数量增加,这是由于四聚体解离加速和单体四聚化减慢所致。F87侧链的错配与界面残基的交换动力学增强有关。在298 K时,各种天然存在的突变体的T群体介于4-7%之间(Δ1.5-1.9 kcal/mol),这与四聚体中四个F87侧链之一的脱扣和溶剂暴露预期的自由能变化(Δ1.6 kcal/mol)一致。我们的数据提供了一个分子水平的图景,展示了四聚体TTR中可能普遍存在的F87侧链错配,这种错配促进了界面构象动力学并增加了聚集倾向。