Department of Integrative Structural and Computational Biology and Skaggs Institute of Chemical Biology, The Scripps Research Institute, La Jolla, California, USA.
Protein Sci. 2024 Sep;33(9):e5101. doi: 10.1002/pro.5101.
Aberrant formation and deposition of human transthyretin (TTR) aggregates causes transthyretin amyloidosis. To initialize aggregation, transthyretin tetramers must first dissociate into monomers that partially unfold to promote entry into the aggregation pathway. The native TTR tetramer (T) is stabilized by docking of the F87 sidechain into an interfacial cavity enclosed by several hydrophobic residues including A120. We have previously shown that an alternative tetramer (T*) with mispacked F87 sidechains is more prone to dissociation and aggregation than the native T state. However, the molecular basis for the reduced stability in T* remains unclear. Here we report characterization of the A120L mutant, where steric hindrance is introduced into the F87 binding site. The x-ray structure of A120L shows that the F87 sidechain is displaced from its docking site across the subunit interface. In A120S, a naturally occurring pathogenic mutant that is less aggregation-prone than A120L, the F87 sidechain is correctly docked, as in the native TTR tetramer. Nevertheless, F-NMR aggregation assays show an elevated population of a monomeric aggregation intermediate in A120S relative to a control containing the native A120, due to accelerated tetramer dissociation and slowed monomer tetramerization. The mispacking of the F87 sidechain is associated with enhanced exchange dynamics for interfacial residues. At 298 K, the T* populations of various naturally occurring mutants fall between 4% and 7% (ΔG ~ 1.5-1.9 kcal/mol), consistent with the free energy change expected for undocking and solvent exposure of one of the four F87 sidechains in the tetramer (ΔG ~ 1.6 kcal/mol). Our data provide a molecular-level picture of the likely universal F87 sidechain mispacking in tetrameric TTR that promotes interfacial conformational dynamics and increases aggregation propensity.
人转甲状腺素蛋白(TTR)的异常形成和沉积导致转甲状腺素蛋白淀粉样变性。为了启动聚集,TTR 四聚体必须首先解离成单体,单体部分展开以促进进入聚集途径。天然 TTR 四聚体(T)通过 F87 侧链与几个包括 A120 在内的疏水性残基封闭的界面腔对接而稳定。我们之前已经表明,具有错误包装的 F87 侧链的替代四聚体(T*)比天然 T 状态更容易解离和聚集。然而,T稳定性降低的分子基础仍不清楚。在这里,我们报告了对 A120L 突变体的表征,其中在 F87 结合位点引入了空间位阻。A120L 的 X 射线结构表明,F87 侧链从其对接位点跨越亚基界面位移。在 A120S 中,一种天然存在的致病性突变体,其聚集倾向比 A120L 低,F87 侧链正确对接,就像在天然 TTR 四聚体中一样。然而,F-NMR 聚集测定显示,与含有天然 A120 的对照相比,A120S 中存在更多的单体聚集中间体,这是由于四聚体解离加速和单体聚合减缓。F87 侧链的错误包装与界面残基的增强交换动力学有关。在 298 K 下,各种天然存在的突变体的 T群体介于 4%到 7%之间(ΔG1.5-1.9 kcal/mol),与四聚体中四个 F87 侧链之一的脱钩和溶剂暴露的自由能变化(ΔG1.6 kcal/mol)相符。我们的数据提供了一个关于四聚体 TTR 中可能普遍存在的 F87 侧链错误包装的分子水平图像,该图像促进了界面构象动力学并增加了聚集倾向。