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本文引用的文献

1
Conformational Dynamics of an Amyloidogenic Intermediate of Transthyretin: Implications for Structural Remodeling and Amyloid Formation.淀粉样变相关转甲状腺素蛋白的构象动力学:对结构重塑和淀粉样形成的影响。
J Mol Biol. 2024 Aug 15;436(16):168673. doi: 10.1016/j.jmb.2024.168673. Epub 2024 Jun 21.
2
Probing the Dissociation Pathway of a Kinetically Labile Transthyretin Mutant.探究一种动力学不稳定转甲状腺素蛋白突变体的离解途径。
J Am Chem Soc. 2024 Jan 10;146(1):532-542. doi: 10.1021/jacs.3c10083. Epub 2023 Dec 22.
3
A transthyretin monomer intermediate undergoes local unfolding and transient interaction with oligomers in a kinetically concerted aggregation pathway.转甲状腺素蛋白单体中间体在聚合途径中经历局部展开和与寡聚物的瞬时相互作用。
J Biol Chem. 2022 Aug;298(8):102162. doi: 10.1016/j.jbc.2022.102162. Epub 2022 Jun 18.
4
Thermodynamic Stability and Aggregation Kinetics of EF Helix and EF Loop Variants of Transthyretin.转甲状腺素蛋白 EF 螺旋和 EF 环变体的热力学稳定性和聚集动力学。
Biochemistry. 2021 Mar 16;60(10):756-764. doi: 10.1021/acs.biochem.1c00073. Epub 2021 Mar 1.
5
Edge Strand Dissociation and Conformational Changes in Transthyretin under Amyloidogenic Conditions.在淀粉样变性条件下转甲状腺素蛋白的边缘链解离和构象变化。
Biophys J. 2020 Nov 17;119(10):1995-2009. doi: 10.1016/j.bpj.2020.08.043. Epub 2020 Oct 20.
6
TTRMDB: A database for structural and functional analysis on the impact of SNPs over transthyretin (TTR) using bioinformatic tools.TTRMDB:一个使用生物信息学工具对单核苷酸多态性(SNP)对转甲状腺素蛋白(TTR)的影响进行结构和功能分析的数据库。
Comput Biol Chem. 2020 Aug;87:107290. doi: 10.1016/j.compbiolchem.2020.107290. Epub 2020 May 25.
7
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.利用 X 射线、中子和电子进行高分子结构测定: Phenix 的最新进展。
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2.
8
A molecular mechanism for transthyretin amyloidogenesis.转甲状腺素蛋白淀粉样变性的分子机制。
Nat Commun. 2019 Feb 25;10(1):925. doi: 10.1038/s41467-019-08609-z.
9
Mispacking of the Phe87 Side Chain Reduces the Kinetic Stability of Human Transthyretin.苯丙氨酸87侧链的错误包装降低了人转甲状腺素蛋白的动力学稳定性。
Biochemistry. 2018 Dec 26;57(51):6919-6922. doi: 10.1021/acs.biochem.8b01046. Epub 2018 Dec 14.
10
NMR Measurements Reveal the Structural Basis of Transthyretin Destabilization by Pathogenic Mutations.核磁共振测量揭示了致病突变导致转甲状腺素蛋白不稳定的结构基础。
Biochemistry. 2018 Jul 31;57(30):4421-4430. doi: 10.1021/acs.biochem.8b00642. Epub 2018 Jul 18.

F87 侧链的包装错误导致转甲状腺素四聚体亚基界面中促进聚集的构象波动。

Mispacking of the F87 sidechain drives aggregation-promoting conformational fluctuations in the subunit interfaces of the transthyretin tetramer.

机构信息

Department of Integrative Structural and Computational Biology and Skaggs Institute of Chemical Biology, The Scripps Research Institute, La Jolla, California, USA.

出版信息

Protein Sci. 2024 Sep;33(9):e5101. doi: 10.1002/pro.5101.

DOI:10.1002/pro.5101
PMID:39149996
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11327909/
Abstract

Aberrant formation and deposition of human transthyretin (TTR) aggregates causes transthyretin amyloidosis. To initialize aggregation, transthyretin tetramers must first dissociate into monomers that partially unfold to promote entry into the aggregation pathway. The native TTR tetramer (T) is stabilized by docking of the F87 sidechain into an interfacial cavity enclosed by several hydrophobic residues including A120. We have previously shown that an alternative tetramer (T*) with mispacked F87 sidechains is more prone to dissociation and aggregation than the native T state. However, the molecular basis for the reduced stability in T* remains unclear. Here we report characterization of the A120L mutant, where steric hindrance is introduced into the F87 binding site. The x-ray structure of A120L shows that the F87 sidechain is displaced from its docking site across the subunit interface. In A120S, a naturally occurring pathogenic mutant that is less aggregation-prone than A120L, the F87 sidechain is correctly docked, as in the native TTR tetramer. Nevertheless, F-NMR aggregation assays show an elevated population of a monomeric aggregation intermediate in A120S relative to a control containing the native A120, due to accelerated tetramer dissociation and slowed monomer tetramerization. The mispacking of the F87 sidechain is associated with enhanced exchange dynamics for interfacial residues. At 298 K, the T* populations of various naturally occurring mutants fall between 4% and 7% (ΔG ~ 1.5-1.9 kcal/mol), consistent with the free energy change expected for undocking and solvent exposure of one of the four F87 sidechains in the tetramer (ΔG ~ 1.6 kcal/mol). Our data provide a molecular-level picture of the likely universal F87 sidechain mispacking in tetrameric TTR that promotes interfacial conformational dynamics and increases aggregation propensity.

摘要

人转甲状腺素蛋白(TTR)的异常形成和沉积导致转甲状腺素蛋白淀粉样变性。为了启动聚集,TTR 四聚体必须首先解离成单体,单体部分展开以促进进入聚集途径。天然 TTR 四聚体(T)通过 F87 侧链与几个包括 A120 在内的疏水性残基封闭的界面腔对接而稳定。我们之前已经表明,具有错误包装的 F87 侧链的替代四聚体(T*)比天然 T 状态更容易解离和聚集。然而,T稳定性降低的分子基础仍不清楚。在这里,我们报告了对 A120L 突变体的表征,其中在 F87 结合位点引入了空间位阻。A120L 的 X 射线结构表明,F87 侧链从其对接位点跨越亚基界面位移。在 A120S 中,一种天然存在的致病性突变体,其聚集倾向比 A120L 低,F87 侧链正确对接,就像在天然 TTR 四聚体中一样。然而,F-NMR 聚集测定显示,与含有天然 A120 的对照相比,A120S 中存在更多的单体聚集中间体,这是由于四聚体解离加速和单体聚合减缓。F87 侧链的错误包装与界面残基的增强交换动力学有关。在 298 K 下,各种天然存在的突变体的 T群体介于 4%到 7%之间(ΔG1.5-1.9 kcal/mol),与四聚体中四个 F87 侧链之一的脱钩和溶剂暴露的自由能变化(ΔG1.6 kcal/mol)相符。我们的数据提供了一个关于四聚体 TTR 中可能普遍存在的 F87 侧链错误包装的分子水平图像,该图像促进了界面构象动力学并增加了聚集倾向。