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细胞外囊泡DNA中的快速突变检测

Rapid mutation detection in extracellular vesicle-DNA.

作者信息

Rahman Md Mofizur, Wang Lixue, Rahman Md Motiar, Chen Yundi, Zhang Wenlong, Wang Jing, Lee Luke P, Wan Yuan

机构信息

The Pq Laboratory of BiomeDx/Rx, Department of Biomedical Engineering, Binghamton University, Binghamton, NY, USA.

Department of Pharmacy, Daffodil International University, Dhaka, Bangladesh.

出版信息

bioRxiv. 2024 Feb 29:2024.02.26.582068. doi: 10.1101/2024.02.26.582068.

Abstract

A PCR- and sequencing-free mutation detection assay facilitates cancer diagnosis and reduces over-reliance on specialized equipment. This benefit was highlighted during the pandemic when high demand for viral nucleic acid testing often sidelined mutation analysis. This shift led to substantial challenges for patients on targeted therapy in tracking mutations. Here, we report a 30-minute DNA mutation detection technique using Cas12a-loaded liposomes in a microplate reader, a fundamental laboratory tool. CRISPR-Cas12a complex and fluorescence-quenching (FQ) probes are introduced into tumor-derived extracellular vesicles (EV) through membrane fusion. When CRISPR-RNA hybridizes with the DNA target, activated Cas12a can -cleave FQ probes, resulting in fluorescence signals for the quantification of DNA mutation. Future advancements in multiplex and high-throughput mutation detection using this assay will streamline self-diagnosis and treatment monitoring at home.

摘要

一种无需PCR和测序的突变检测方法有助于癌症诊断,并减少对专业设备的过度依赖。在疫情期间,这种优势尤为凸显,当时对病毒核酸检测的高需求常常使突变分析被搁置一旁。这种转变给接受靶向治疗的患者追踪突变带来了巨大挑战。在此,我们报告一种在酶标仪(一种基本的实验室工具)中使用负载Cas12a的脂质体进行30分钟DNA突变检测的技术。CRISPR-Cas12a复合物和荧光淬灭(FQ)探针通过膜融合被引入肿瘤来源的细胞外囊泡(EV)中。当CRISPR-RNA与DNA靶标杂交时,被激活的Cas12a能够切割FQ探针,产生用于定量DNA突变的荧光信号。使用该方法在多重和高通量突变检测方面的未来进展将简化家庭自我诊断和治疗监测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/701d/10925088/47c38c10fc5a/nihpp-2024.02.26.582068v1-f0001.jpg

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