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真菌中特定性阶段的A到I mRNA编辑由tRNA编辑酶介导。

Sexual stage-specific A-to-I mRNA editing is mediated by tRNA-editing enzymes in fungi.

作者信息

Bian Zhuyun, Wang Zeyi, Wang Diwen, Xu Jin-Rong

机构信息

Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907.

出版信息

Proc Natl Acad Sci U S A. 2024 Mar 19;121(12):e2319235121. doi: 10.1073/pnas.2319235121. Epub 2024 Mar 11.

Abstract

A-to-I RNA editing catalyzed by adenosine-deaminase-acting-on-RNA (ADARs) was assumed to be unique to metazoans because fungi and plants lack ADAR homologs. However, genome-wide messenger RNA (mRNA) editing was found to occur specifically during sexual reproduction in filamentous ascomycetes. Because systematic characterization of adenosine/cytosine deaminase genes has implicated the involvement of and orthologs in A-to-I editing, in this study, we used genetic and biochemical approaches to characterize the role of , an essential adenosine-deaminase-acting-on-tRNA (ADAT) gene, in mRNA editing in . had a sexual-stage-specific isoform and formed heterodimers with enzymatically inactive . Using a repeat-induced point (RIP) mutation approach, we identified 17 mutations in that affected mRNA editing during sexual reproduction but had no effect on transfer RNA (tRNA) editing and vegetative growth. The functional importance of the H352Y and Q375*(nonsense) mutations in sexual reproduction and mRNA editing were confirmed by introducing specific point mutations into the endogenous allele in the wild type. An in vitro assay was developed to show that FgTad2-His proteins purified from perithecia, but not from vegetative hyphae, had mRNA editing activities. Moreover, the H352Y mutation affected the enzymatic activity of FgTad2 to edit mRNA but had no effect on its ADAT activity. We also identified proteins co-purified with FgTad2-His by mass spectrometry analysis and found that two of them have the RNA recognition motif. Taken together, genetic and biochemical data from this study demonstrated that FgTad2, an ADAT, catalyzes A-to-I mRNA editing with the stage-specific isoform and cofactors during sexual reproduction in fungi.

摘要

由作用于RNA的腺苷脱氨酶(ADARs)催化的A-to-I RNA编辑被认为是后生动物所特有的,因为真菌和植物缺乏ADAR同源物。然而,全基因组信使RNA(mRNA)编辑被发现特别发生在丝状子囊菌的有性生殖过程中。由于对腺苷/胞嘧啶脱氨酶基因的系统表征表明 和 直系同源物参与了A-to-I编辑,在本研究中,我们使用遗传和生化方法来表征 (一个作用于tRNA的必需腺苷脱氨酶(ADAT)基因)在 中的mRNA编辑作用。 具有一个有性阶段特异性异构体,并与无酶活性的 形成异二聚体。使用重复诱导点(RIP)突变方法,我们在 中鉴定出17个影响有性生殖过程中mRNA编辑但对转运RNA(tRNA)编辑和营养生长无影响的突变。通过将特定点突变引入野生型中的内源性 等位基因,证实了H352Y和Q375*(无义)突变在有性生殖和mRNA编辑中的功能重要性。开发了一种体外测定法以表明从子囊果而非营养菌丝体中纯化的FgTad2-His蛋白具有mRNA编辑活性。此外,H352Y突变影响FgTad2编辑mRNA的酶活性,但对其ADAT活性无影响。我们还通过质谱分析鉴定了与FgTad2-His共纯化的蛋白质,并发现其中两个具有RNA识别基序。综上所述,本研究的遗传和生化数据表明,ADAT FgTad2在真菌有性生殖过程中通过阶段特异性异构体和辅因子催化A-to-I mRNA编辑。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f00a/10962958/d11828ec9823/pnas.2319235121fig01.jpg

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