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在从孟加拉国流通纸币分离出的细菌中发现带有I176F突变的CTX-M-127。

CTX-M-127 with I176F mutations found in bacteria isolates from Bangladeshi circulating banknotes.

作者信息

Ali Md Zannat, Srinivasan Sankaranarayanan, Akter Selina

机构信息

Department of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.

Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India.

出版信息

Sci Rep. 2024 Mar 11;14(1):5866. doi: 10.1038/s41598-024-56207-x.

Abstract

Extended-spectrum beta-lactamase (ESBL)-producing organisms are widely recognized as clinically relevant causes of difficult-to-treat infections. CTX-M has formed a rapidly growing family distributed worldwide among a wide range of clinical bacteria, particularly members of Enterobacteriaceae. Circulating banknotes, exchanged daily among people, pose a potential vehicle for transmitting multidrug resistance. We screened for ESBL-carrying bacteria in the present study and reported CTX-M mutations in Bangladesh's banknotes. We sequenced the genes and performed homology modeling using the Swiss model with CTX-M-15 (4HBT) as a template. Then, we performed molecular docking of mecillinam with the template and the generated model using Autodock 4.2 (Release 4.2.6). After docking, we visually inspected the complexes built using Autodock tools for polar contacts and pi-pi interactions in PyMOL 2.5.4. Our partially sequenced bla was related to bla and bla. We observed multiple single-nucleotide substitution mutations, i.e., G613T (silent mutation), A626T (I176F), and A503G (N135D). Homology modeling showed high similarity when the model was superimposed over the template. The orientation of Asn (135) in the template and Asp (135) in the model does not show a significant difference. Likewise, Ile (176) in the template and Phe (176) in the model offer the same orientation. Our generated model could bind to Lys237, Ser240, and Asp135 residues with the lowest binding energy on docking. Our predicted binding of the mecillinam to the mutated D-135 residue in the model indicates contributions and supports previous reports proposing CTX-M-15 to CTX-M-127 mutational conversion on the mecillinum resistance phenotype.

摘要

产超广谱β-内酰胺酶(ESBL)的微生物被广泛认为是导致难以治疗的感染的临床相关病因。CTX-M已形成一个迅速增长的家族,在全球范围内广泛分布于多种临床细菌中,尤其是肠杆菌科成员。每天在人与人之间流通的纸币是传播多重耐药性的潜在载体。在本研究中,我们筛查了携带ESBL的细菌,并报告了孟加拉国纸币中的CTX-M突变。我们对基因进行了测序,并以CTX-M-15(4HBT)为模板使用瑞士模型进行同源建模。然后,我们使用Autodock 4.2(版本4.2.6)对美西林与模板和生成的模型进行分子对接。对接后,我们使用PyMOL 2.5.4直观检查了使用Autodock工具构建的复合物的极性接触和π-π相互作用。我们部分测序的bla与bla和bla相关。我们观察到多个单核苷酸替代突变,即G613T(沉默突变)、A626T(I176F)和A503G(N135D)。同源建模显示,当模型与模板叠加时具有高度相似性。模板中的Asn(135)和模型中的Asp(135)的取向没有显著差异。同样,模板中的Ile(176)和模型中的Phe(176)具有相同的取向。我们生成的模型在对接时可以与Lys237、Ser240和Asp135残基以最低结合能结合。我们预测美西林与模型中突变的D-135残基的结合表明了其作用,并支持了先前提出的关于美西林耐药表型上CTX-M-15到CTX-M-127突变转化的报道。

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