显性反转:遗传冲突的解决与遗传变异的维持

Dominance reversals: the resolution of genetic conflict and maintenance of genetic variation.

作者信息

Grieshop Karl, Ho Eddie K H, Kasimatis Katja R

机构信息

School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK.

Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada M5S 1A1.

出版信息

Proc Biol Sci. 2024 Mar 13;291(2018):20232816. doi: 10.1098/rspb.2023.2816.

Abstract

Beneficial reversals of dominance reduce the costs of genetic trade-offs and can enable selection to maintain genetic variation for fitness. Beneficial dominance reversals are characterized by the beneficial allele for a given context (e.g. habitat, developmental stage, trait or sex) being dominant in that context but recessive where deleterious. This context dependence at least partially mitigates the fitness consequence of heterozygotes carrying one non-beneficial allele for their context and can result in balancing selection that maintains alternative alleles. Dominance reversals are theoretically plausible and are supported by mounting empirical evidence. Here, we highlight the importance of beneficial dominance reversals as a mechanism for the mitigation of genetic conflict and review the theory and empirical evidence for them. We identify some areas in need of further research and development and outline three methods that could facilitate the identification of antagonistic genetic variation (dominance ordination, allele-specific expression and allele-specific ATAC-Seq (assay for transposase-accessible chromatin with sequencing)). There is ample scope for the development of new empirical methods as well as reanalysis of existing data through the lens of dominance reversals. A greater focus on this topic will expand our understanding of the mechanisms that resolve genetic conflict and whether they maintain genetic variation.

摘要

有益的显性逆转降低了基因权衡的成本,并能使选择维持适合度的遗传变异。有益的显性逆转的特征是,在特定环境(如栖息地、发育阶段、性状或性别)中,给定环境的有益等位基因是显性的,但在有害环境中是隐性的。这种环境依赖性至少部分减轻了携带一个对其环境无益处等位基因的杂合子的适合度后果,并能导致维持替代等位基因的平衡选择。显性逆转在理论上是合理的,并得到了越来越多实证证据的支持。在这里,我们强调有益的显性逆转作为减轻基因冲突机制的重要性,并回顾其理论和实证证据。我们确定了一些需要进一步研究和发展的领域,并概述了三种有助于识别拮抗遗传变异的方法(显性排序、等位基因特异性表达和等位基因特异性ATAC-Seq(转座酶可及染色质测序分析))。开发新的实证方法以及通过显性逆转的视角重新分析现有数据有很大的空间。对这个主题的更多关注将扩展我们对解决基因冲突机制以及它们是否维持遗传变异的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8858/10932723/dc29ea4379a3/rspb20232816f01.jpg

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