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小分子提高猪成纤维细胞中CRISPR核糖核蛋白介导的精确基因编辑效率

Improving the Efficiency of CRISPR Ribonucleoprotein-Mediated Precise Gene Editing by Small Molecules in Porcine Fibroblasts.

作者信息

Zhao Yunjing, Li Xinyu, Liu Chang, Jiang Chaoqian, Guo Xiaochen, Xu Qianqian, Yin Zhi, Liu Zhonghua, Mu Yanshuang

机构信息

Key Laboratory of Animal Cellular and Genetic Engineering of Heilongjiang Province, Northeast Agricultural University, Harbin 150030, China.

College of Life Science, Northeast Agricultural University, Harbin 150030, China.

出版信息

Animals (Basel). 2024 Feb 25;14(5):719. doi: 10.3390/ani14050719.

Abstract

The aim of this study was to verify whether small molecules can improve the efficiency of precision gene editing using clustered regularly interspaced short palindromic repeats (CRISPR) ribonucleoprotein (RNP) in porcine cells. CRISPR associated 9 (Cas9) protein, small guide RNA (sgRNA), phosphorothioate-modified single-stranded oligonucleotides (ssODN), and different small molecules were used to generate precise nucleotide substitutions at the insulin (INS) gene by homology-directed repair (HDR) in porcine fetal fibroblasts (PFFs). These components were introduced into PFFs via electroporation, followed by polymerase chain reaction (PCR) for the target site. All samples were sequenced and analyzed, and the efficiencies of different small molecules at the target site were compared. The results showed that the optimal concentrations of the small molecules, including L-189, NU7441, SCR7, L755507, RS-1, and Brefeldin A, for in vitro-cultured PFFs' viability were determined. Compared with the control group, the single small molecules including L-189, NU7441, SCR7, L755507, RS-1, and Brefeldin A increased the efficiency of HDR-mediated precise gene editing from 1.71-fold to 2.28-fold, respectively. There are no benefits in using the combination of two small molecules, since none of the combinations improved the precise gene editing efficiency compared to single small molecules. In conclusion, these results suggested that a single small molecule can increase the efficiency of CRISPR RNP-mediated precise gene editing in porcine cells.

摘要

本研究的目的是验证小分子是否能提高猪细胞中使用成簇规律间隔短回文重复序列(CRISPR)核糖核蛋白(RNP)进行精确基因编辑的效率。使用CRISPR相关蛋白9(Cas9)、小向导RNA(sgRNA)、硫代磷酸酯修饰的单链寡核苷酸(ssODN)和不同的小分子,通过同源定向修复(HDR)在猪胎儿成纤维细胞(PFFs)中对胰岛素(INS)基因进行精确的核苷酸替换。通过电穿孔将这些成分导入PFFs,随后对靶位点进行聚合酶链反应(PCR)。对所有样本进行测序和分析,并比较不同小分子在靶位点的效率。结果表明,确定了包括L-189、NU7441、SCR7、L755507、RS-1和布雷菲德菌素A在内的小分子对体外培养的PFFs活力的最佳浓度。与对照组相比,单个小分子L-189、NU7441、SCR7、L755507、RS-1和布雷菲德菌素A分别将HDR介导的精确基因编辑效率提高了1.71倍至2.28倍。使用两种小分子的组合没有益处,因为与单个小分子相比,没有一种组合提高了精确基因编辑效率。总之,这些结果表明单个小分子可以提高猪细胞中CRISPR RNP介导的精确基因编辑效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/77e8/10931096/358dbef7e64d/animals-14-00719-g001.jpg

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