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一个大区域控制着转运RNA基因的转录。

A large region controls tRNA gene transcription.

作者信息

Wilson E T, Larson D, Young L S, Sprague K U

出版信息

J Mol Biol. 1985 May 25;183(2):153-63. doi: 10.1016/0022-2836(85)90209-8.

DOI:10.1016/0022-2836(85)90209-8
PMID:3847510
Abstract

We find that tRNA gene transcription is controlled by a region much larger than the previously described internal segments known as A and B boxes. In a Bombyx mori silkworm tRNA2Ala gene, transcriptionally important sequences extend at least from -13 to +146, and thus include sequences both upstream and downstream from the 98 base-pair primary transcription unit. We show that the apparent size of this control region can be manipulated by the conditions used to measure transcription in vitro. Specifically, the use of high concentrations of templates to overcome the effect of an inhibitory substance in crude extracts can make the control region appear smaller. We propose that this finding explains much of the observed variability in the sequence requirements for transcription of different tRNA genes. If so, large size is likely to be a general feature of tRNA gene control regions.

摘要

我们发现,转运RNA(tRNA)基因转录受一个区域的控制,该区域比先前描述的被称为A盒和B盒的内部片段大得多。在家蚕的tRNA2丙氨酸基因中,转录重要序列至少从-13延伸至+146,因此包括98个碱基对初级转录单元上下游的序列。我们表明,这个控制区域的表观大小可以通过体外测量转录所使用的条件来操控。具体而言,使用高浓度模板来克服粗提物中抑制物质的影响会使控制区域显得更小。我们提出,这一发现解释了不同tRNA基因转录序列要求中观察到的许多变异性。如果是这样,大尺寸很可能是tRNA基因控制区域的一个普遍特征。

相似文献

1
A large region controls tRNA gene transcription.一个大区域控制着转运RNA基因的转录。
J Mol Biol. 1985 May 25;183(2):153-63. doi: 10.1016/0022-2836(85)90209-8.
2
Transcription of a cloned Bombyx mori tRNA2Ala gene: nucleotide sequence of the tRNA precursor and its processing in vitro.克隆的家蚕tRNA2Ala基因的转录:tRNA前体的核苷酸序列及其体外加工
Cell. 1979 Nov;18(3):817-28. doi: 10.1016/0092-8674(79)90134-x.
3
Silkworm 5S RNA and alanine tRNA genes share highly conserved 5' flanking and coding sequences.家蚕5S核糖体RNA和丙氨酸转运RNA基因具有高度保守的5'侧翼序列和编码序列。
Mol Cell Biol. 1982 Dec;2(12):1524-31. doi: 10.1128/mcb.2.12.1524-1531.1982.
4
5' flanking sequence signals are required for activity of silkworm alanine tRNA genes in homologous in vitro transcription systems.家蚕丙氨酸tRNA基因在同源体外转录系统中的活性需要5'侧翼序列信号。
Cell. 1980 Nov;22(1 Pt 1):171-8. doi: 10.1016/0092-8674(80)90165-8.
5
Transcriptional properties of BmX, a moderately repetitive silkworm gene that is an RNA polymerase III template.BmX的转录特性,BmX是一种中等重复的家蚕基因,是RNA聚合酶III的模板。
Mol Cell Biol. 1988 Feb;8(2):624-31. doi: 10.1128/mcb.8.2.624-631.1988.
6
The primary transcription product of a silkworm alanine tRNA gene: identification of in vitro sites of initiation, termination and processing.家蚕丙氨酸tRNA基因的初级转录产物:体外起始、终止和加工位点的鉴定
Cell. 1979 Dec;18(4):1217-29. doi: 10.1016/0092-8674(79)90234-4.
7
In vitro transcription of a silkworm 5S RNA gene requires an upstream signal.家蚕5S RNA基因的体外转录需要一个上游信号。
Proc Natl Acad Sci U S A. 1984 Sep;81(17):5519-22. doi: 10.1073/pnas.81.17.5519.
8
Regulation of glycine tRNA gene expression in the posterior silk glands of the silkworm Bombyx mori.家蚕后部丝腺中甘氨酸tRNA基因表达的调控
Proc Natl Acad Sci U S A. 1992 Feb 1;89(3):1070-4. doi: 10.1073/pnas.89.3.1070.
9
Sequences far downstream from the classical tRNA promoter elements bind RNA polymerase III transcription factors.经典tRNA启动子元件下游很远的序列会结合RNA聚合酶III转录因子。
Mol Cell Biol. 1991 Mar;11(3):1382-92. doi: 10.1128/mcb.11.3.1382-1392.1991.
10
The minimum intragenic sequences required for promotion of eukaryotic tRNA gene transcription.促进真核生物tRNA基因转录所需的最小基因内序列。
Nucleic Acids Res. 1982 Sep 25;10(18):5393-406. doi: 10.1093/nar/10.18.5393.

引用本文的文献

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Increased recombination between active tRNA genes.活性tRNA基因之间的重组增加。
DNA Cell Biol. 2006 Jun;25(6):359-64. doi: 10.1089/dna.2006.25.359.
2
TATA-Binding protein-TATA interaction is a key determinant of differential transcription of silkworm constitutive and silk gland-specific tRNA(Ala) genes.TATA结合蛋白与TATA的相互作用是家蚕组成型和丝腺特异性tRNA(丙氨酸)基因差异转录的关键决定因素。
Mol Cell Biol. 2000 Feb;20(4):1329-43. doi: 10.1128/MCB.20.4.1329-1343.2000.
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Differential expression of individual suppressor tRNA(Trp) gene gene family members in vitro and in vivo in the nematode Caenorhabditis elegans.
线虫秀丽隐杆线虫中单个抑制性tRNA(Trp)基因家族成员在体外和体内的差异表达。
Mol Cell Biol. 1998 Feb;18(2):703-9. doi: 10.1128/MCB.18.2.703.
4
Specific binding sites for a pol III transcriptional repressor and pol II transcription factor YY1 within the internucleosomal spacer region in primate Alu repetitive elements.灵长类动物Alu重复元件核小体间间隔区域内的RNA聚合酶III转录抑制因子和RNA聚合酶II转录因子YY1的特异性结合位点。
Gene Expr. 1996;6(3):151-68.
5
TFIIIC1 acts through a downstream region to stabilize TFIIIC2 binding to RNA polymerase III promoters.TFIIIC1通过一个下游区域发挥作用,以稳定TFIIIC2与RNA聚合酶III启动子的结合。
Mol Cell Biol. 1996 Dec;16(12):6841-50. doi: 10.1128/MCB.16.12.6841.
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Centromeric polymerase III transcription units in Chironomus pallidivittatus.苍白摇蚊中的着丝粒聚合酶III转录单元
Nucleic Acids Res. 1996 May 1;24(9):1662-8. doi: 10.1093/nar/24.9.1662.
7
Silkworm TFIIIB binds both constitutive and silk gland-specific tRNA Ala promoters but protects only the constitutive promoter from DNase I cleavage.家蚕TFIIIB能结合组成型和丝腺特异性tRNA丙氨酸启动子,但仅保护组成型启动子免受DNase I切割。
Mol Cell Biol. 1996 Mar;16(3):1256-66. doi: 10.1128/MCB.16.3.1256.
8
Transcription of a silkworm tRNA(cAla) gene is directed by two AT-rich upstream sequence elements.家蚕tRNA(cAla)基因的转录由两个富含AT的上游序列元件指导。
Nucleic Acids Res. 1993 Dec 25;21(25):5875-81. doi: 10.1093/nar/21.25.5875.
9
TFIIIR is an isoleucine tRNA.TFIIIR是一种异亮氨酸转运RNA。
Mol Cell Biol. 1994 Jun;14(6):3588-95. doi: 10.1128/mcb.14.6.3588-3595.1994.
10
Silkworm TFIIIA requires additional class III factors for commitment to transcription complex assembly on a 5S RNA gene.家蚕TFIIIA在5S RNA基因上形成转录复合体时,需要其他III类因子来完成组装。
Nucleic Acids Res. 1995 Apr 11;23(7):1244-51. doi: 10.1093/nar/23.7.1244.