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InBIO条形码计划数据库:伊比利亚蜜蜂的DNA条形码

The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees.

作者信息

Wood Thomas James, Gaspar Hugo, Le Divelec Romain, Penado Andreia, Silva Teresa Luísa, Mata Vanessa A, Veríssimo Joana, Michez Denis, Castro Sílvia, Loureiro João, Beja Pedro, Ferreira Sónia

机构信息

Naturalis Biodiversity Center, Leiden, Netherlands Naturalis Biodiversity Center Leiden Netherlands.

Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456, Coimbra, Portugal Centre for Functional Ecology, Associate Laboratory TERRA, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra Portugal.

出版信息

Biodivers Data J. 2024 Mar 5;12:e117172. doi: 10.3897/BDJ.12.e117172. eCollection 2024.

Abstract

BACKGROUND

Bees are important actors in terrestrial ecosystems and are recognised for their prominent role as pollinators. In the Iberian Peninsula, approximately 1,100 bee species are known, with nearly 100 of these species being endemic to the Peninsula. A reference collection of DNA barcodes, based on morphologically identified bee specimens, representing 514 Iberian species, was constructed. The "InBIO Barcoding Initiative Database: DNA Barcodes of Iberian bees" dataset contains records of 1,059 sequenced specimens. The species of this dataset correspond to about 47% of Iberian bee species diversity and 21% of endemic species diversity. For peninsular Portugal only, the corresponding coverage is 71% and 50%. Specimens were collected between 2014 and 2022 and are deposited in the research collection of Thomas Wood (Naturalis Biodiversity Center, The Netherlands), in the FLOWer Lab collection at the University of Coimbra (Portugal), in the Andreia Penado collection at the Natural History and Science Museum of the University of Porto (MHNC-UP) (Portugal) and in the InBIO Barcoding Initiative (IBI) reference collection (Vairão, Portugal).

NEW INFORMATION

Of the 514 species sequenced, 75 species from five different families are new additions to the Barcode of Life Data System (BOLD) and 112 new BINs were added. Whilst the majority of species were assigned to a single BIN (94.9%), 27 nominal species were assigned to multiple BINs. Although the placement into multiple BINs may simply reflect genetic diversity and variation, it likely also represents currently unrecognised species-level diversity across diverse taxa, such as Lepeletier, 1841, Lepeletier, 1841, (Schrank, 1781), Morawitz, 1869 and Smith, 1853. Further species pairs of , and were placed into the same BINs, emphasising the need for integrative taxonomy within Iberia and across the Mediterranean Basin more broadly. These data substantially contribute to our understanding of bee genetic diversity and DNA barcodes in Iberia and provide an important baseline for ongoing taxonomic revisions in the West Palaearctic biogeographical region.

摘要

背景

蜜蜂是陆地生态系统中的重要角色,因其作为传粉者的突出作用而受到认可。在伊比利亚半岛,已知约有1100种蜜蜂,其中近100种为该半岛特有。基于形态学鉴定的蜜蜂标本构建了一个包含514种伊比利亚蜜蜂的DNA条形码参考数据集。“InBIO条形码倡议数据库:伊比利亚蜜蜂的DNA条形码”数据集包含1059个测序标本的记录。该数据集的物种约占伊比利亚蜜蜂物种多样性的47%,占特有物种多样性的21%。仅就葡萄牙半岛而言,相应的覆盖率分别为71%和50%。标本采集于2014年至2022年期间,存放在荷兰自然生物多样性中心的托马斯·伍德研究收藏库、葡萄牙科英布拉大学的FLOWer实验室收藏库、葡萄牙波尔图大学自然历史与科学博物馆的安德烈亚·佩纳多收藏库(MHNC-UP)以及InBIO条形码倡议(IBI)参考收藏库(葡萄牙瓦伊良)。

新信息

在测序的514个物种中,来自五个不同科的75个物种是生命条形码数据系统(BOLD)的新增物种,新增了112个新的BIN。虽然大多数物种被归入单个BIN(94.9%),但有27个名义物种被归入多个BIN。尽管归入多个BIN可能仅仅反映了遗传多样性和变异,但它也可能代表了目前在不同分类群中未被识别的物种水平多样性,如1841年的勒佩莱蒂耶属、1841年的勒佩莱蒂耶属、(1781年的施兰克属)、1869年的莫拉维茨属和1853年的史密斯属。此外,还有一些物种对,如[具体物种对未给出],被归入同一个BIN,这凸显了在伊比利亚半岛乃至更广泛的地中海盆地进行综合分类学研究的必要性。这些数据极大地有助于我们了解伊比利亚半岛蜜蜂的遗传多样性和DNA条形码,并为西古北区生物地理区域正在进行的分类学修订提供了重要的基线。

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