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一个历史性的“残骸”:船蛆(Teredo navalis Linnaeus,1758年)的转录组组装 。(注:原文中Linnaeus的年份有误,应为1758年)

An historical "wreck": A transcriptome assembly of the naval shipworm, Teredo navalis Linnaeus, 1978.

作者信息

Gomes-Dos-Santos André, Domingues Marcos, Ruivo Raquel, Fonseca Elza, Froufe Elsa, Deyanova Diana, Franco João N, C Castro L Filipe

机构信息

CIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, 4450-208 Matosinhos, Portugal.

CIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, 4450-208 Matosinhos, Portugal.

出版信息

Mar Genomics. 2024 Apr;74:101097. doi: 10.1016/j.margen.2024.101097. Epub 2024 Feb 27.

DOI:10.1016/j.margen.2024.101097
PMID:38485291
Abstract

Historically famous for their negative impact on human-built marine wood structures, mollusc shipworms play a central ecological role in marine ecosystems. Their association with bacterial symbionts, providing cellulolytic and nitrogen-fixing activities, underscores their exceptional wood-eating and wood-boring behaviours, improving energy transfer and the recycling of essential nutrients locked in the wood cellulose. Importantly, from a molecular standpoint, a minute of omic resources are available from this lineage of Bivalvia. Here, we produced and assembled a transcriptome from the globally distributed naval shipworm, Teredo navalis (family Teredinidae). The transcriptome was obtained by sequencing the total RNA from five equidistant segments of the whole body of a T. navalis specimen. The quality of the produced assembly was accessed with several statistics, revealing a highly contiguous (1194 N50) and complete (over 90% BUSCO scores for Eukaryote and Metazoan databases) transcriptome, with nearly 38,000 predicted ORF, more than half being functionally annotated. Our findings pave the way to investigate the unique evolutionary biology of these highly modified bivalves and lay the foundation for an adequate gene annotation of a full genome sequence of the species.

摘要

软体船蛆在历史上因对人类建造的海洋木结构产生负面影响而闻名,但它们在海洋生态系统中发挥着核心生态作用。它们与细菌共生体的关联,具有纤维素分解和固氮活性,突出了它们独特的食木和钻木行为,改善了能量转移以及木材纤维素中锁定的必需营养物质的循环利用。重要的是,从分子角度来看,关于双壳贝类这一谱系的组学资源非常有限。在此,我们从全球分布的船蛆(Teredo navalis,船蛆科)中生成并组装了一个转录组。该转录组是通过对一只船蛆标本全身五个等距部位的总RNA进行测序获得的。通过多种统计方法评估所生成组装体的质量,结果显示该转录组具有高度连续性(N50为1194)且完整性高(在真核生物和后生动物数据库中BUSCO得分超过90%),预测的开放阅读框近38000个,其中一半以上具有功能注释。我们的研究结果为探究这些高度特化双壳贝类独特的进化生物学铺平了道路,并为该物种全基因组序列的充分基因注释奠定了基础。

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