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携带五个质粒的新型南极海洋球形菌属菌株IT1-181的全基因组序列。

Complete genome sequence of the novel Antarctic Oceanisphaera sp. IT1-181 that carried five plasmids.

作者信息

Hu Yong-Qiang, Zhang Yi-He, Han Wei, Hu Ting, Du Yu, Zeng Yin-Xin

机构信息

Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, China.

Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, China; Department of Biology, College of Science, Shantou University, Shantou 515063, China.

出版信息

Mar Genomics. 2024 Apr;74:101083. doi: 10.1016/j.margen.2024.101083. Epub 2024 Jan 9.

Abstract

Bacteria of the genus Oceanisphaera in the class Gammaproteobacteria are widely distributed in marine environments. Oceanisphaera sp. IT1-181 was isolated from intertidal sediment in the coastal region of the Chinese Great Wall Station on the Fildes Peninsula, King George Island, Antarctica. Here, we sequenced the complete genome of strain IT1-181, which contained a single chromosome of 3,572,184 bp (G + C content of 49.89 mol%) with five plasmids. A total of 3229 protein-coding genes, 88 tRNA genes, and 25 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1-181 was not only a potentially novel species of the genus Oceanisphaera, but also harbored genes involved in biosynthesizing ectoine as well as poly-β-hydroxybutyric acid (PHB). In addition, genes of a complete type I-E CRISPR-Cas system were found in the bacterium. The results indicate the potential of strain Oceanisphaera sp. IT1-181 in biotechnology and are helpful for us understanding its ecological roles in the changing Antarctic intertidal zone environment.

摘要

γ-变形菌纲中的海洋球形菌属细菌广泛分布于海洋环境中。海洋球形菌属菌株IT1-181是从南极乔治王岛菲尔德斯半岛中国长城站沿海地区的潮间带沉积物中分离得到的。在此,我们对菌株IT1-181的全基因组进行了测序,其包含一条3,572,184 bp的单染色体(G + C含量为49.89 mol%)以及5个质粒。共获得了3229个蛋白质编码基因、88个tRNA基因和25个rRNA基因。基因组序列分析表明,菌株IT1-181不仅可能是海洋球形菌属的一个新物种,还含有参与生物合成四氢嘧啶以及聚-β-羟基丁酸(PHB)的基因。此外,在该细菌中发现了一个完整的I-E型CRISPR-Cas系统的基因。这些结果表明海洋球形菌属菌株IT1-181在生物技术方面的潜力,有助于我们了解其在不断变化的南极潮间带环境中的生态作用。

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