Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India.
Int J Syst Evol Microbiol. 2012 Aug;62(Pt 8):1926-1931. doi: 10.1099/ijs.0.036475-0. Epub 2011 Oct 14.
A novel Gram-staining-negative, coccoid, non-motile bacterium, designated strain V1-41(T), was isolated from a sample of marine sediment collected, at a depth of 200 m, from Kongsfjorden (an inlet on the west coast of Spitsbergen, an island that forms part of the Svalbard archipelago in the Arctic Ocean). The strain formed cream-brown colonies on marine agar. Cells of the novel strain were positive in tests for catalase, oxidase, lysine decarboxylase and ornithine decarboxylase activities but negative for gelatinase and lipase activities. They hydrolysed aesculin, starch and urea, but not casein or DNA. Most of the cellular fatty acids were medium-chain and saturated (37.1%) or long-chain and unsaturated (27.8%), with C(12:0) (37.1%), C(18:1)ω7c, and summed features 2 (19.3%) and 3 (24.1%) predominating. The major respiratory quinone was Q-8. The polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified aminophospholipids, four unidentified phospholipids and one other unidentified lipid. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the novel strain's closest known relatives were Oceanisphaera litoralis DSM 15406(T) (98.5% sequence similarity) and Oceanisphaera donghaensis BL1(T) (98.3%). In DNA-DNA hybridizations, however, the levels of relatedness between strain V1-41(T) and O. litoralis DSM 15406(T) and between the novel strain and O. donghaensis DSM 17589(T) were found to be only 19% and 29%, respectively. Based on these low levels of similarity at the DNA-DNA level and the phenotypic and chemotaxonomic differences from O. litoralis DSM 15406(T) and O. donghaensis DSM 17589(T), strain V1-41(T) represents a novel species of the genus Oceanisphaera for which the name Oceanisphaera arctica sp. nov. is proposed. The type strain is V1-41(T) ( = CCUG 58690(T) = KCTC 23013(T) = NBRC 106171(T)).
一株新型革兰氏阴性、球形、非运动细菌,命名为 V1-41(T) 菌株,从 Kongsfjorden(斯瓦尔巴群岛的一个岛屿,位于北冰洋的 Spitsbergen 西海岸的一个入口处)的海洋沉积物样本中分离得到,样本采集深度为 200 米。该菌株在海洋琼脂上形成奶油棕色菌落。新型菌株的细胞在过氧化氢酶、氧化酶、赖氨酸脱羧酶和鸟氨酸脱羧酶活性测试中呈阳性,但在明胶酶和脂肪酶活性测试中呈阴性。它们水解马栗树皮素、淀粉和尿素,但不水解酪蛋白或 DNA。大多数细胞脂肪酸为中链饱和脂肪酸(37.1%)或长链不饱和脂肪酸(27.8%),其中 C(12:0)(37.1%)、C(18:1)ω7c 和特征总和 2(19.3%)和 3(24.1%)占主导地位。主要呼吸醌为 Q-8。极性脂由磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油、两种未鉴定的氨基磷脂、四种未鉴定的磷脂和一种其他未鉴定的脂组成。基于 16S rRNA 基因序列的系统发育分析表明,新型菌株的最接近的已知亲缘菌株为 Oceanisphaera litoralis DSM 15406(T)(98.5%序列相似性)和 Oceanisphaera donghaensis BL1(T)(98.3%)。然而,在 DNA-DNA 杂交实验中,菌株 V1-41(T) 与 O. litoralis DSM 15406(T) 以及新型菌株与 O. donghaensis DSM 17589(T) 的相关性分别仅为 19%和 29%。基于这些低相似性的 DNA-DNA 水平和与 O. litoralis DSM 15406(T) 和 O. donghaensis DSM 17589(T) 的表型和化学分类学差异,菌株 V1-41(T) 代表了 Oceanisphaera 属的一个新型物种,建议命名为 Arctic Oceanisphaera arctica sp. nov. 。模式菌株为 V1-41(T)(=CCUG 58690(T)=KCTC 23013(T)=NBRC 106171(T))。