State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Syst Appl Microbiol. 2024 May;47(2-3):126503. doi: 10.1016/j.syapm.2024.126503. Epub 2024 Mar 12.
A taxonomic investigation was conducted on four bacterial strains isolated from soil contaminated with polycyclic aromatic hydrocarbons and heavy metals. Phylogenetic analysis revealed that these strains belonged to the family Chitinophagaceae. Examination of the 16S rRNA genes indicated that their sequence identities were below 97.6 % compared to any known and validly nominated bacterial species. The genomes of the four strains ranged from 4.12 to 8.76 Mb, with overall G + C molar contents varying from 41.28 % to 50.39 %. Predominant cellular fatty acids included iso-C, iso-C G, and iso-C 3-OH. The average nucleotide identity ranged from 66.90 % to 74.63 %, and digital DNA-DNA hybridization was 12.5-12.8 %. Based on the genomic and phenotypic features of the new strains, four novel species and two new genera were proposed within the family Chitinophagaceae. The ecological distributions were investigated by data-mining of NCBI databases, and results showed that additional strains or species of the newly proposed taxa were widely distributed in various environments, including polluted soil and waters. Functional analysis demonstrated that strains H1-2-19X, JS81, and JY13-12 exhibited resistance to arsenite (III) and chromate (VI). The proposed names for the four novel species are Paraflavitalea pollutisoli (type strain H1-2-19X = JCM 36460 = CGMCC 1.61321), Terrimonas pollutisoli (type strain H1YJ31 = JCM 36215 = CGMCC 1.61343), Pollutibacter soli (type strain JS81 = JCM 36462 = CGMCC 1.61338), and Polluticoccus soli (type strain JY13-12 = JCM 36463 = CGMCC 1.61341).
对从多环芳烃和重金属污染土壤中分离到的 4 株细菌进行了分类学研究。系统发育分析表明,这些菌株属于几丁质噬菌科。16S rRNA 基因的检测表明,与任何已知的有效命名的细菌种相比,它们的序列同一性低于 97.6%。这 4 株菌的基因组大小在 4.12 到 8.76 Mb 之间,总 G+C 摩尔含量在 41.28%到 50.39%之间。主要的细胞脂肪酸包括 iso-C、iso-C G 和 iso-C 3-OH。平均核苷酸同一性在 66.90%到 74.63%之间,数字 DNA-DNA 杂交率为 12.5-12.8%。基于新菌株的基因组和表型特征,在几丁质噬菌科中提出了 4 个新种和 2 个新属。通过对 NCBI 数据库的数据挖掘,对新提出的分类单元的生态分布进行了调查,结果表明,新提出的分类单元的其他菌株或种广泛分布于各种环境中,包括污染土壤和水。功能分析表明,菌株 H1-2-19X、JS81 和 JY13-12 对亚砷酸盐(III)和铬酸盐(VI)具有抗性。四个新种的命名为 Pollutisoli(模式菌株 H1-2-19X=JCM 36460=CGMCC 1.61321)、Pollutisoli(模式菌株 H1YJ31=JCM 36215=CGMCC 1.61343)、Pollutibacter soli(模式菌株 JS81=JCM 36462=CGMCC 1.61338)和 Polluticoccus soli(模式菌株 JY13-12=JCM 36463=CGMCC 1.61341)。