State Key Laboratory of Rice Biology, Key Laboratory of Rice Biology and Breeding of Ministry of Agriculture, China National Rice Research Institute, Hangzhou, 311400, China.
BMC Plant Biol. 2024 Mar 18;24(1):196. doi: 10.1186/s12870-024-04845-8.
Chalkiness is a common phenotype induced by various reasons, such as abiotic stress or the imbalance of starch synthesis and metabolism during the development period. However, the reason mainly for one gene losing its function such as NAC (TFs has a large family in rice) which may cause premature is rarely known to us.
The Ko-Osnac02 mutant demonstrated an obviously early maturation stage compared to the wild type (WT) with 15 days earlier. The result showed that the mature endosperm of Ko-Osnac02 mutant exhibited chalkiness, characterized by white-core and white-belly in mature endosperm. As grain filling rate is a crucial factor in determining the yield and quality of rice (Oryza sativa, ssp. japonica), it's significant that mutant has a lower amylose content (AC) and higher soluble sugar content in the mature endosperm. Interestingly among the top DEGs in the RNA sequencing of N2 (3DAP) and WT seeds revealed that the OsBAM2 (LOC_Os10g32810) expressed significantly high in N2 mutant, which involved in Maltose up-regulated by the starch degradation. As Prediction of Protein interaction showed in the chalky endosperm formation in N2 seeds (3 DAP), seven genes were expressed at a lower-level which should be verified by a heatmap diagrams based on DEGs of N2 versus WT. The Tubulin genes controlling cell cycle are downregulated together with the MCM family genes MCM4 ( ↓), MCM7 ( ↑), which may cause white-core in the early endosperm development. In conclusion, the developing period drastically decreased in the Ko-Osnac02 mutants, which might cause the chalkiness in seeds during the early endosperm development.
The gene OsNAC02 which controls a great genetic co-network for cell cycle regulation in early development, and KO-Osnac02 mutant shows prematurity and white-core in endosperm.
垩白是由非生物胁迫或淀粉合成和代谢失衡等多种原因诱导的常见表型。然而,由于一个基因失去功能,如 NAC(在水稻中 TFs 有一个大家族),导致早期成熟的原因我们知之甚少。
与野生型(WT)相比,Ko-Osnac02 突变体表现出明显的早熟阶段,早熟 15 天。结果表明,Ko-Osnac02 突变体的成熟胚乳表现出垩白,特征为成熟胚乳的白芯和白腹。由于籽粒灌浆速率是决定水稻(Oryza sativa,ssp. japonica)产量和品质的关键因素,突变体在成熟胚乳中具有较低的直链淀粉含量(AC)和较高的可溶性糖含量具有重要意义。有趣的是,在 N2(3DAP)和 WT 种子的 RNA 测序中,顶级差异表达基因(DEGs)的结果表明,在 N2 突变体中,OsBAM2(LOC_Os10g32810)表达显著升高,该基因参与淀粉降解导致的麦芽糖上调。如在 N2 种子(3 DAP)的垩白胚乳形成中的蛋白质互作预测所示,有七个基因的表达水平较低,这需要通过基于 N2 与 WT 的 DEGs 的热图图谱来验证。控制细胞周期的微管蛋白基因与 MCM 家族基因 MCM4(↓)、MCM7(↑)一起下调,这可能导致早期胚乳发育中的白芯。总之,Ko-Osnac02 突变体的发育周期明显缩短,这可能导致早期胚乳发育过程中种子出现垩白。
控制早期发育中细胞周期调控的重要遗传共网络的基因 OsNAC02,KO-Osnac02 突变体表现出早熟和胚乳白芯。