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用于从高光谱图像合成数字组织学图像的条件生成对抗网络(cGAN)。

Conditional Generative Adversarial Network (cGAN) for Synthesis of Digital Histologic Images from Hyperspectral Images.

作者信息

Ma Ling, Sherey Jeremy, Palsgrove Doreen, Fei Baowei

机构信息

Center for Imaging and Surgical Innovation, University of Texas at Dallas, Richardson, TX.

Department of Bioengineering, University of Texas at Dallas, Richardson, TX.

出版信息

Proc SPIE Int Soc Opt Eng. 2023 Feb;12471. doi: 10.1117/12.2653715. Epub 2023 Apr 6.

DOI:10.1117/12.2653715
PMID:38495871
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10942653/
Abstract

Hyperspectral imaging (HSI) has been demonstrated in various digital pathology applications. However, the intrinsic high dimensionality of hyperspectral images makes it difficult for pathologists to visualize the information. The aim of this study is to develop a method to transform hyperspectral images of hemoxylin & eosin (H&E)-stained slides to natural-color RGB histologic images for easy visualization. Hyperspectral images were obtained at 40× magnification with an automated microscopic imaging system and downsampled by various factors to generate data equivalent to different magnifications. High-resolution digital histologic RGB images were cropped and registered to the corresponding hyperspectral images as the ground truth. A conditional generative adversarial network (cGAN) was trained to output natural color RGB images of the histological tissue samples. The generated synthetic RGBs have similar color and sharpness to real RGBs. Image classification was implemented using the real and synthetic RGBs, respectively, with a pretrained network. The classification of tumor and normal tissue using the HSI-synthesized RGBs yielded a comparable but slightly higher accuracy and AUC than the real RGBs. The proposed method can reduce the acquisition time of two imaging modalities while giving pathologists access to the high information density of HSI and the quality visualization of RGBs. This study demonstrated that HSI may provide a potentially better alternative to current RGB-based pathologic imaging and thus make HSI a viable tool for histopathological diagnosis.

摘要

高光谱成像(HSI)已在各种数字病理学应用中得到验证。然而,高光谱图像固有的高维度特性使得病理学家难以直观地理解其中的信息。本研究的目的是开发一种方法,将苏木精和伊红(H&E)染色玻片的高光谱图像转换为自然色彩的RGB组织学图像,以便于直观观察。使用自动显微成像系统在40倍放大倍数下获取高光谱图像,并通过不同因子进行下采样,以生成相当于不同放大倍数的数据。将高分辨率数字组织学RGB图像裁剪并配准到相应的高光谱图像上作为基准真值。训练一个条件生成对抗网络(cGAN)来输出组织学组织样本的自然色彩RGB图像。生成的合成RGB图像在颜色和清晰度方面与真实RGB图像相似。分别使用真实RGB图像和合成RGB图像,通过一个预训练网络进行图像分类。使用HSI合成的RGB图像对肿瘤组织和正常组织进行分类,其准确率和曲线下面积(AUC)与真实RGB图像相当,但略高。所提出的方法可以减少两种成像方式的采集时间,同时让病理学家能够获取高光谱图像的高信息密度以及RGB图像的高质量可视化效果。本研究表明,高光谱成像可能为当前基于RGB的病理成像提供一种潜在的更好替代方案,从而使高光谱成像成为组织病理学诊断的一种可行工具。

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本文引用的文献

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Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2612963. Epub 2022 Apr 4.
2
Hyperspectral Microscopic Imaging for the Detection of Head and Neck Squamous Cell Carcinoma on Histologic Slides.用于在组织学切片上检测头颈部鳞状细胞癌的高光谱显微成像
Proc SPIE Int Soc Opt Eng. 2021 Feb;11603. doi: 10.1117/12.2581970. Epub 2021 Feb 15.
3
Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging.
基于无监督的高光谱组织学图像超分辨率重建的全切片成像。
J Biomed Opt. 2022 May;27(5). doi: 10.1117/1.JBO.27.5.056502.
4
Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and machine learning.使用偏振高光谱成像和机器学习在病理切片上自动检测头颈部鳞状细胞癌。
Proc SPIE Int Soc Opt Eng. 2021 Feb;11603. doi: 10.1117/12.2582330. Epub 2021 Feb 15.
5
Hyperspectral and multispectral imaging in digital and computational pathology: a systematic review [Invited].数字与计算病理学中的高光谱和多光谱成像:一项系统综述[特邀文章]
Biomed Opt Express. 2020 May 21;11(6):3195-3233. doi: 10.1364/BOE.386338. eCollection 2020 Jun 1.
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Hyperspectral imaging and deep learning for the detection of breast cancer cells in digitized histological images.用于在数字化组织学图像中检测乳腺癌细胞的高光谱成像与深度学习
Proc SPIE Int Soc Opt Eng. 2020 Feb;11320. doi: 10.1117/12.2548609. Epub 2020 Mar 16.
7
Conditional generative adversarial network for synthesizing hyperspectral images of breast cancer cells from digitized histology.用于从数字化组织学合成乳腺癌细胞高光谱图像的条件生成对抗网络。
Proc SPIE Int Soc Opt Eng. 2020 Feb;11320. doi: 10.1117/12.2549994. Epub 2020 Mar 16.
8
Hyperspectral Microscopic Imaging for Automatic Detection of Head and Neck Squamous Cell Carcinoma Using Histologic Image and Machine Learning.使用组织学图像和机器学习的高光谱显微成像技术对头颈部鳞状细胞癌进行自动检测
Proc SPIE Int Soc Opt Eng. 2020 Feb;11320. doi: 10.1117/12.2549369. Epub 2020 Mar 16.
9
Hyperspectral Imaging for the Detection of Glioblastoma Tumor Cells in H&E Slides Using Convolutional Neural Networks.基于卷积神经网络的 H&E 切片中Glioblastoma 肿瘤细胞的高光谱成像检测。
Sensors (Basel). 2020 Mar 30;20(7):1911. doi: 10.3390/s20071911.
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Tumor detection of the thyroid and salivary glands using hyperspectral imaging and deep learning.利用高光谱成像和深度学习进行甲状腺及唾液腺肿瘤检测。
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