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使用高光谱成像和深度学习在全组织切片上检测甲状腺癌

Thyroid Carcinoma Detection on Whole Histologic Slides Using Hyperspectral Imaging and Deep Learning.

作者信息

Tran Minh Ha, Ma Ling, Litter James V, Chen Amy Y, Fei Baowei

机构信息

Univ. of Texas at Dallas, Dept. of Bioengineering, Richardson, TX.

Univ. of Texas at Dallas, Center for Imaging and Surgical Innovation, Richardson, TX.

出版信息

Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2612963. Epub 2022 Apr 4.

DOI:10.1117/12.2612963
PMID:36798939
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9929647/
Abstract

Hyperspectral imaging (HSI), a non-invasive imaging modality, has been successfully used in many different biological and medical applications. One such application is in the field of oncology, where hyperspectral imaging is being used on histologic samples. This study compares the performances of different image classifiers using different imaging modalities as training data. From a database of 33 fixed tissues from head and neck patients with follicular thyroid carcinoma, we produced three different datasets: an RGB image dataset that was acquired from a whole slide image scanner, a hyperspectral (HS) dataset that was acquired with a compact hyperspectral camera, and an HS-synthesized RGB image dataset. Three separate deep learning classifiers were trained using the three datasets. We show that the deep learning classifier trained on HSI data has an area under the receiver operator characteristic curve (AUC-ROC) of 0.966, higher than that of the classifiers trained on RGB and HSI-synthesized RGB data. This study demonstrates that hyperspectral images improve the performance of cancer classification on whole histologic slides. Hyperspectral imaging and deep learning provide an automatic tool for thyroid cancer detection on whole histologic slides.

摘要

高光谱成像(HSI)是一种非侵入性成像方式,已成功应用于许多不同的生物和医学领域。其中一个应用领域是肿瘤学,高光谱成像正用于组织学样本。本研究比较了使用不同成像方式作为训练数据的不同图像分类器的性能。从33例患有滤泡性甲状腺癌的头颈患者的固定组织数据库中,我们生成了三个不同的数据集:一个从全切片图像扫描仪获取的RGB图像数据集、一个用紧凑型高光谱相机获取的高光谱(HS)数据集以及一个HS合成RGB图像数据集。使用这三个数据集分别训练了三个深度学习分类器。我们表明,在HSI数据上训练的深度学习分类器的受试者工作特征曲线下面积(AUC-ROC)为0.966,高于在RGB和HS合成RGB数据上训练的分类器。本研究表明,高光谱图像提高了全组织学切片上癌症分类的性能。高光谱成像和深度学习为全组织学切片上的甲状腺癌检测提供了一种自动工具。

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本文引用的文献

1
Hyperspectral Microscopic Imaging for the Detection of Head and Neck Squamous Cell Carcinoma on Histologic Slides.用于在组织学切片上检测头颈部鳞状细胞癌的高光谱显微成像
Proc SPIE Int Soc Opt Eng. 2021 Feb;11603. doi: 10.1117/12.2581970. Epub 2021 Feb 15.
2
Pixel-level Tumor Margin Assessment of Surgical Specimen with Hyperspectral Imaging and Deep Learning Classification.基于高光谱成像和深度学习分类的手术标本像素级肿瘤边缘评估
Proc SPIE Int Soc Opt Eng. 2021 Feb;11598. doi: 10.1117/12.2581046. Epub 2021 Feb 15.
3
Deep Learning for Clinical Image Analyses in Oral Squamous Cell Carcinoma: A Review.深度学习在口腔鳞状细胞癌临床影像分析中的应用:综述。
JAMA Otolaryngol Head Neck Surg. 2021 Oct 1;147(10):893-900. doi: 10.1001/jamaoto.2021.2028.
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Hyperspectral imaging and deep learning for the detection of breast cancer cells in digitized histological images.用于在数字化组织学图像中检测乳腺癌细胞的高光谱成像与深度学习
Proc SPIE Int Soc Opt Eng. 2020 Feb;11320. doi: 10.1117/12.2548609. Epub 2020 Mar 16.
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Hyperspectral Microscopic Imaging for Automatic Detection of Head and Neck Squamous Cell Carcinoma Using Histologic Image and Machine Learning.使用组织学图像和机器学习的高光谱显微成像技术对头颈部鳞状细胞癌进行自动检测
Proc SPIE Int Soc Opt Eng. 2020 Feb;11320. doi: 10.1117/12.2549369. Epub 2020 Mar 16.
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Intraoperative Margin Assessment in Head and Neck Cancer: A Case of Misuse and Abuse?头颈部癌症的术中切缘评估:误用和滥用的案例?
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Head and Neck Cancer.头颈癌
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Head and Neck Cancer Detection in Digitized Whole-Slide Histology Using Convolutional Neural Networks.基于卷积神经网络的数字化全切片组织学中的头颈部癌症检测
Sci Rep. 2019 Oct 1;9(1):14043. doi: 10.1038/s41598-019-50313-x.
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Hyperspectral Imaging of Head and Neck Squamous Cell Carcinoma for Cancer Margin Detection in Surgical Specimens from 102 Patients Using Deep Learning.使用深度学习对102例患者手术标本中的头颈鳞状细胞癌进行高光谱成像以检测癌切缘
Cancers (Basel). 2019 Sep 14;11(9):1367. doi: 10.3390/cancers11091367.
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A Novel Digital Score for Abundance of Tumour Infiltrating Lymphocytes Predicts Disease Free Survival in Oral Squamous Cell Carcinoma.一种新的肿瘤浸润淋巴细胞丰度数字评分可预测口腔鳞状细胞癌无病生存。
Sci Rep. 2019 Sep 16;9(1):13341. doi: 10.1038/s41598-019-49710-z.