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分析M1-乙酰胆碱受体激动剂和拮抗剂中分子体积增加所引起的效应:一项结构与计算研究。

Analysing the effect caused by increasing the molecular volume in M1-AChR receptor agonists and antagonists: a structural and computational study.

作者信息

Montejo-López Wilber, Sampieri-Cabrera Raúl, Nicolás-Vázquez María Inés, Aceves-Hernández Juan Manuel, Razo-Hernández Rodrigo Said

机构信息

Departamento de Ciencias Químicas, Facultad de Estudios Superiores Cuautitlán Campo 1, Universidad Nacional Autónoma de México Avenida 1o de Mayo s/n, Colonia Santa María las Torres Cuautitlán Izcalli Estado de Mexico 54740 Mexico

Departamento de Fisiología, Facultad de Medicina, Universidad Nacional Autónoma de México, Centro de Ciencias de Complejidad, Universidad Nacional Autónoma de México Mexico

出版信息

RSC Adv. 2024 Mar 14;14(13):8615-8640. doi: 10.1039/d3ra07380g.

Abstract

M1 muscarinic acetylcholine receptor (M1-AChR), a member of the G protein-coupled receptors (GPCR) family, plays a crucial role in learning and memory, making it an important drug target for Alzheimer's disease (AD) and schizophrenia. M1-AChR activation and deactivation have shown modifying effects in AD and PD preclinical models, respectively. However, understanding the pharmacology associated with M1-AChR activation or deactivation is complex, because of the low selectivity among muscarinic subtypes, hampering their therapeutic applications. In this regard, we constructed two quantitative structure-activity relationship (QSAR) models, one for M1-AChR agonists (total and partial), and the other for the antagonists. The binding mode of 59 structurally different compounds, including agonists and antagonists with experimental binding affinity values (pKi), were analyzed employing computational molecular docking over different structures of M1-AChR. Furthermore, we considered the interaction energy (), the number of rotatable bonds (NRB), and lipophilicity (ilogP) for the construction of the QSAR model for agonists ( = 89.64, = 78, and = 79.1). For the QSAR model of antagonists ( = 88.44, = 82, and = 78.1) we considered the , the fraction of sp carbons Csp, and lipophilicity (Mlog). Our results suggest that the ligand volume is a determinant to establish its biological activity (agonist or antagonist), causing changes in binding energy, and determining the affinity for M1-AChR.

摘要

M1毒蕈碱型乙酰胆碱受体(M1-AChR)是G蛋白偶联受体(GPCR)家族的一员,在学习和记忆中起关键作用,使其成为阿尔茨海默病(AD)和精神分裂症的重要药物靶点。M1-AChR的激活和失活分别在AD和PD临床前模型中显示出调节作用。然而,由于毒蕈碱亚型之间的选择性较低,妨碍了它们的治疗应用,因此了解与M1-AChR激活或失活相关的药理学较为复杂。在这方面,我们构建了两个定量构效关系(QSAR)模型,一个用于M1-AChR激动剂(完全激动剂和部分激动剂),另一个用于拮抗剂。利用计算分子对接技术,对59种结构不同的化合物(包括具有实验结合亲和力值(pKi)的激动剂和拮抗剂)在M1-AChR的不同结构上的结合模式进行了分析。此外,我们在构建激动剂的QSAR模型时考虑了相互作用能()、可旋转键的数量(NRB)和亲脂性(ilogP)( = 89.64, = 78, = 79.1)。在构建拮抗剂的QSAR模型时( = 88.44, = 82, = 78.1),我们考虑了、sp碳原子的分数Csp和亲脂性(Mlog)。我们的结果表明,配体体积是确定其生物活性(激动剂或拮抗剂)、引起结合能变化以及确定对M1-AChR亲和力的一个决定因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83bb/10938299/d569836ca0da/d3ra07380g-f1.jpg

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