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基于线粒体基因组和核序列探讨基于分子系统发育、生物地理学历史和形态发生的软蜱(蜱螨目:硬蜱科)的新见解。

New insights into the molecular phylogeny, biogeographical history, and diversification of Amblyomma ticks (Acari: Ixodidae) based on mitogenomes and nuclear sequences.

机构信息

Biodiversity and Evolutionary Biology Department (BEBD), Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain.

Invertebrate Zoology Department, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.

出版信息

Parasit Vectors. 2024 Mar 18;17(1):139. doi: 10.1186/s13071-024-06131-w.

DOI:10.1186/s13071-024-06131-w
PMID:38500136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10946108/
Abstract

BACKGROUND

Amblyomma is the third most diversified genus of Ixodidae that is distributed across the Indomalayan, Afrotropical, Australasian (IAA), Nearctic and Neotropical biogeographic ecoregions, reaching in the Neotropic its highest diversity. There have been hints in previously published phylogenetic trees from mitochondrial genome, nuclear rRNA, from combinations of both and morphology that the Australasian Amblyomma or the Australasian Amblyomma plus the Amblyomma species from the southern cone of South America, might be sister-group to the Amblyomma of the rest of the world. However, a stable phylogenetic framework of Amblyomma for a better understanding of the biogeographic patterns underpinning its diversification is lacking.

METHODS

We used genomic techniques to sequence complete and nearly complete mitochondrial genomes -ca. 15 kbp- as well as the nuclear ribosomal cluster -ca. 8 kbp- for 17 Amblyomma ticks in order to study the phylogeny and biogeographic pattern of the genus Amblyomma, with particular emphasis on the Neotropical region. The new genomic information generated here together with genomic information available on 43 ticks (22 other Amblyomma species and 21 other hard ticks-as outgroup-) were used to perform probabilistic methods of phylogenetic and biogeographic inferences and time-tree estimation using biogeographic dates.

RESULTS

In the present paper, we present the strongest evidence yet that Australasian Amblyomma may indeed be the sister-group to the Amblyomma of the rest of the world (species that occur mainly in the Neotropical and Afrotropical zoogeographic regions). Our results showed that all Amblyomma subgenera (Cernyomma, Anastosiella, Xiphiastor, Adenopleura, Aponomma and Dermiomma) are not monophyletic, except for Walkeriana and Amblyomma. Likewise, our best biogeographic scenario supports the origin of Amblyomma and its posterior diversification in the southern hemisphere at 47.8 and 36.8 Mya, respectively. This diversification could be associated with the end of the connection of Australasia and Neotropical ecoregions by the Antarctic land bridge. Also, the biogeographic analyses let us see the colonization patterns of some neotropical Amblyomma species to the Nearctic.

CONCLUSIONS

We found strong evidence that the main theater of diversification of Amblyomma was the southern hemisphere, potentially driven by the Antarctic Bridge's intermittent connection in the late Eocene. In addition, the subgeneric classification of Amblyomma lacks evolutionary support. Future studies using denser taxonomic sampling may lead to new findings on the phylogenetic relationships and biogeographic history of Amblyomma genus.

摘要

背景

扁虱属是分布于印度马来亚、非洲热带、澳大拉西亚(IAA)、北美和新热带生物地理生态区的第三大最为多样化的硬蜱属,在新热带地区达到了最高的多样性。先前发表的基于线粒体基因组、核 rRNA、两者组合和形态的系统发育树已经暗示,澳大拉西亚扁虱属或澳大拉西亚扁虱属加上来自南美的南锥体的扁虱属,可能是世界其他地区的扁虱属的姊妹群。然而,为了更好地理解支持其多样化的生物地理模式,缺乏对扁虱属的稳定的系统发育框架。

方法

我们使用基因组技术对 17 种扁虱属的蜱虫进行了完整和近乎完整的线粒体基因组(约 15 kbp)以及核核糖体簇(约 8 kbp)的测序,以研究扁虱属的系统发育和生物地理模式,特别强调新热带地区。这里产生的新基因组信息以及 43 种蜱虫(22 种其他扁虱属和 21 种其他硬蜱作为外群)的基因组信息一起,用于使用生物地理日期进行系统发育和生物地理推断以及时间树估计的概率方法。

结果

在本文中,我们提供了迄今为止最强的证据,表明澳大拉西亚扁虱属实际上可能是世界其他地区(主要发生在新热带和非洲热带动物地理区的物种)的扁虱属的姊妹群。我们的结果表明,除了沃克氏亚属和扁虱属外,所有扁虱属亚属(Cernyomma、Anastosiella、Xiphiastor、Adenopleura、Aponomma 和 Dermiomma)都不是单系的。同样,我们最好的生物地理情景支持扁虱属及其在南半球的起源和随后的多样化,分别为 47.8 和 36.8 Mya。这种多样化可能与南极陆桥结束澳大拉西亚和新热带生态区之间的连接有关。此外,生物地理分析让我们看到了一些新热带扁虱属物种向近北极地区的殖民模式。

结论

我们发现了强有力的证据表明,扁虱属的主要多样化区域是南半球,这可能是由晚始新世南极桥间歇性连接驱动的。此外,扁虱属的亚属分类缺乏进化支持。使用更密集的分类采样的未来研究可能会导致关于扁虱属的系统发育关系和生物地理历史的新发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/9b62db7ca028/13071_2024_6131_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/6e5c1371ca71/13071_2024_6131_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/b4dc8d1108ec/13071_2024_6131_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/9b62db7ca028/13071_2024_6131_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/6e5c1371ca71/13071_2024_6131_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/b4dc8d1108ec/13071_2024_6131_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/740e/10946108/9b62db7ca028/13071_2024_6131_Fig3_HTML.jpg

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