Department of Complex Systems Science, Graduate School of Informatics, Nagoya University, Nagoya, Aichi, Japan.
Institute for Glyco-core Research, Nagoya University, Nagoya, Aichi, Japan.
Protein Sci. 2024 Apr;33(4):e4934. doi: 10.1002/pro.4934.
AlphaFold protein structure database (AlphaFold DB) archives a vast number of predicted models. We conducted systematic data mining against AlphaFold DB and discovered an uncharacterized P-loop NTPase family. The structure of the protein family was surprisingly novel, showing an atypical topology for P-loop NTPases, noticeable twofold symmetry, and two pairs of independent putative active sites. Our findings show that structural data mining is a powerful approach to identifying undiscovered protein families.
AlphaFold 蛋白质结构数据库 (AlphaFold DB) 归档了大量预测模型。我们对 AlphaFold DB 进行了系统的数据挖掘,发现了一个未被描述的 P 环 NTPase 家族。该蛋白家族的结构非常新颖,表现出 P 环 NTPase 的非典型拓扑结构、明显的二倍对称性以及两对独立的假定活性位点。我们的研究结果表明,结构数据挖掘是识别未被发现的蛋白质家族的有效方法。