Basu Arkaprabha, Paul Manash K, Weiss Shimon
Biophys Rev (Melville). 2022 Dec 30;3(4):041304. doi: 10.1063/5.0096188. eCollection 2022 Dec.
Actin, a primary component of the cell cytoskeleton can have multiple isoforms, each of which can have specific properties uniquely suited for their purpose. These monomers are then bound together to form polymeric filaments utilizing adenosine triphosphate hydrolysis as a source of energy. Proteins, such as Arp2/3, VASP, formin, profilin, and cofilin, serve important roles in the polymerization process. These filaments can further be linked to form stress fibers by proteins called actin-binding proteins, such as α-actinin, myosin, fascin, filamin, zyxin, and epsin. These stress fibers are responsible for mechanotransduction, maintaining cell shape, cell motility, and intracellular cargo transport. Cancer metastasis, specifically epithelial mesenchymal transition (EMT), which is one of the key steps of the process, is accompanied by the formation of thick stress fibers through the Rho-associated protein kinase, MAPK/ERK, and Wnt pathways. Recently, with the advent of "field cancerization," pre-malignant cells have also been demonstrated to possess stress fibers and related cytoskeletal features. Analytical methods ranging from western blot and RNA-sequencing to cryo-EM and fluorescent imaging have been employed to understand the structure and dynamics of actin and related proteins including polymerization/depolymerization. More recent methods involve quantifying properties of the actin cytoskeleton from fluorescent images and utilizing them to study biological processes, such as EMT. These image analysis approaches exploit the fact that filaments have a unique structure (curvilinear) compared to the noise or other artifacts to separate them. Line segments are extracted from these filament images that have assigned lengths and orientations. Coupling such methods with statistical analysis has resulted in development of a new reporter for EMT in lung cancer cells as well as their drug responses.
肌动蛋白是细胞骨架的主要成分,可有多种同工型,每种同工型都具有特别适合其功能的特定属性。然后,这些单体利用三磷酸腺苷水解作为能量来源结合在一起形成聚合物细丝。诸如Arp2/3、VASP、formin、profilin和cofilin等蛋白质在聚合过程中发挥重要作用。这些细丝可通过称为肌动蛋白结合蛋白的蛋白质(如α-肌动蛋白、肌球蛋白、fascin、细丝蛋白、桩蛋白和epsin)进一步连接形成应力纤维。这些应力纤维负责机械转导、维持细胞形状、细胞运动以及细胞内货物运输。癌症转移,特别是上皮-间质转化(EMT),这是该过程的关键步骤之一,伴随着通过Rho相关蛋白激酶、MAPK/ERK和Wnt途径形成粗大的应力纤维。最近,随着“场癌化”的出现,癌前细胞也已被证明具有应力纤维和相关的细胞骨架特征。从蛋白质印迹法、RNA测序到冷冻电镜和荧光成像等分析方法已被用于了解肌动蛋白和相关蛋白质的结构和动力学,包括聚合/解聚。更新的方法包括从荧光图像中量化肌动蛋白细胞骨架的特性,并利用它们来研究生物过程,如EMT。这些图像分析方法利用细丝与噪声或其他伪像相比具有独特结构(曲线状)这一事实来将它们分离。从这些具有指定长度和方向的细丝图像中提取线段。将这些方法与统计分析相结合,已开发出一种用于肺癌细胞EMT及其药物反应的新型报告基因。