Department of Laboratory Medicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Faculty of Medical Laboratory Science, College of Health Science and Technology, School of Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
mSystems. 2024 Apr 16;9(4):e0136923. doi: 10.1128/msystems.01369-23. Epub 2024 Mar 20.
The high-risk clone ST307, associated with various carbapenem resistance genes, exhibits a global distribution and prevalence. However, in China, it has remained sporadic and has rarely been detected. In this study, we reported an outbreak caused by nine ST307 CRKP isolates harboring in Shanghai, China, in 2022. We employed antimicrobial susceptibility testing, conjugation assay, whole-genome sequencing (WGS) and comparative genomics, phylogenetic analysis, and fitness and virulence comparison to further characterize the isolates causing the outbreak. Besides , these nine isolates co-carried and , exhibiting nearly identical resistance profiles with high-level resistance to carbapenems and ceftazidime/avibactam, while showing susceptibility to colistin and tigecycline. was located on an IncX3 plasmid of 45,403 bp with a high frequency of conjugative ability. Phylogenetic and single-nucleotide polymorphism (SNP) analysis indicated the nature of clonal transmission with a maximum of five SNPs between these nine isolates, and they were closely related to strains obtained from the United States. ST307 isolates in our study showed a relatively lower virulence but higher growth rates and certain adaptability compared with ST11 isolates. Clinical investigation revealed that shared nursing staff in a mixed emergency intensive care unit ward and doctors' movement between wards might be responsible for the outbreak. The nonexistence before and sudden emergence of ST307 suggested that the currently circulating ST307 clone was a newly introduced superbug in our hospital. In conclusion, we revealed that -producing ST307 CRKP isolates, a globally significant high-risk clone, are spreading in China, posing a substantial threat to public health.IMPORTANCEThe high-risk clone ST307, associated with various carbapenemases, including KPC, NDM, and OXA, has a global distribution. However, it is rarely reported in China, let alone causing outbreaks. Here, we found an outbreak caused by the clonal transmission of nine ST307 CRKP isolates. Clinical investigation revealed that shared nurses in a mixed emergency intensive care unit ward and doctors' movement between wards might be responsible for the outbreak. In our study, the nine NDM-5-producing ST307 isolates exhibited high-level resistance to carbapenems and ceftazidime-avibactam, high conjugative ability to J53, and certain adaptability to environment, phylogenetically closet to the United States. All these features make ST307 clone the next successful clone comparable to ST11 clone in China. Therefore, it is imperative for us to vigilantly monitor the prevalence of carbapenem-resistant and promptly implement measures to control the spread of ST307 in China.
产 NDM-5 型碳青霉烯酶的高风险 ST307 克隆在全球范围内流行,与多种碳青霉烯酶基因相关,包括 KPC、NDM 和 OXA 等。然而,在中国,该克隆株的流行情况较为罕见,很少被检测到。本研究报道了 2022 年在中国上海由携带 9 株 ST307 型耐碳青霉烯类肠杆菌科细菌(CRKP)的克隆株引起的暴发事件。我们通过药敏试验、接合实验、全基因组测序(WGS)和比较基因组学、系统发育分析以及对毒力和适应性的比较,对引起暴发的分离株进行了进一步的特征描述。除了 外,这 9 株分离株还共同携带 和 ,对碳青霉烯类和头孢他啶/阿维巴坦具有近乎相同的高水平耐药性,而对黏菌素和替加环素敏感。 位于一个 45403bp 的 IncX3 质粒上,具有较高的接合能力。系统发育和单核苷酸多态性(SNP)分析表明,这些分离株具有克隆传播的性质,在这 9 株分离株之间存在最多 5 个 SNP,与从美国获得的菌株密切相关。与 ST11 分离株相比,本研究中的 ST307 分离株的毒力相对较低,但生长速度较快,具有一定的适应性。临床调查显示,混合急诊重症监护病房病房中共享的护理人员以及医生在病房之间的流动可能是导致暴发的原因。ST307 在本研究中之前不存在,而突然出现,表明目前流行的 ST307 克隆株是我院新引入的超级细菌。总之,我们揭示了产 NDM-5 的 ST307 型耐碳青霉烯类肠杆菌科细菌(CRKP)分离株,这是一种具有全球重要意义的高风险克隆株,正在中国传播,对公共卫生构成重大威胁。