Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China.
Biology Department and Institute of Marine Sciences, College of Science, Shantou University, Shantou 515063, China.
Nucleic Acids Res. 2023 Jul 5;51(W1):W587-W592. doi: 10.1093/nar/gkad359.
tvBOT is a user-friendly and efficient web application for visualizing, modifying, and annotating phylogenetic trees. It is highly efficient in data preparation without requiring redundant style and syntax data. Tree annotations are powered by a data-driven engine that only requires practical data organized in uniform formats and saved as one table file. A layer manager is developed to manage annotation dataset layers, allowing the addition of a specific layer by selecting the columns of a corresponding annotation data file. Furthermore, tvBOT renders style adjustments in real-time and diversified ways. All style adjustments can be made on a highly interactive user interface and are available for mobile devices. The display engine allows the changes to be updated and rendered in real-time. In addition, tvBOT supports the combination display of 26 annotation dataset types to achieve multiple formats for tree annotations with reusable phylogenetic data. Besides several publication-ready graphics formats, JSON format can be exported to save the final drawing state and all related data, which can be shared with other users, uploaded to restore the final drawing state for re-editing or used as a style template for quickly retouching a new tree file. tvBOT is freely available at: https://www.chiplot.online/tvbot.html.
tvBOT 是一个用户友好且高效的网络应用程序,用于可视化、修改和注释系统发育树。它在数据准备方面非常高效,不需要冗余的样式和语法数据。树注释由一个数据驱动的引擎提供支持,该引擎只需要实用的数据以统一的格式组织并保存为一个表文件。开发了一个图层管理器来管理注释数据集图层,允许通过选择相应注释数据文件的列来添加特定的图层。此外,tvBOT 以实时和多样化的方式呈现样式调整。所有样式调整都可以在高度交互的用户界面上进行,并可用于移动设备。显示引擎允许实时更新和呈现更改。此外,tvBOT 支持 26 种注释数据集类型的组合显示,以实现具有可重复系统发育数据的树注释的多种格式。除了几种出版就绪的图形格式外,还可以导出 JSON 格式以保存最终绘图状态和所有相关数据,这些数据可以与其他用户共享、上传以恢复最终绘图状态以供重新编辑,或用作快速修饰新树文件的样式模板。tvBOT 可免费在以下网址获得:https://www.chiplot.online/tvbot.html。