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单细胞 RNA 测序和批量 RNA 测序的综合分析揭示了 BLCA 中二硫键凋亡的特征和预后特征。

Comprehensive analysis of scRNA-seq and bulk RNA-seq reveal the characteristics of disulfidptosis and a prognostic signature in BLCA.

机构信息

Department of Urology, The First People’s Hospital of Jingzhou, Jingzhou 434000, China.

Department of Urology, Renmin Hospital of Wuhan University, Wuhan 430060, China.

出版信息

Aging (Albany NY). 2024 Mar 20;16(6):5751-5771. doi: 10.18632/aging.205686.

Abstract

Disulfidptosis is a newly discovered mode of cell death. However, its biological mechanism in bladder cancer (BLCA) is still uncharacterized. In this investigation, we firstly examined the expression and mutation of disulfidptosis-related genes (DRGs) in BLCA. Two disulfidptosis phenotypes associated with DRGs expression patterns and immune cell infiltration were built. A disulfidptosis risk score signature was constructed based on ten differentially expressed genes (DEGs) between the disulfidptosis subtypes, which allowed patients to be stratified into high- and low-risk groups. We further confirmed that the disulfidptosis risk score signature has great power to predict prognosis, immune cell infiltration, and immunotherapy efficacy in BLCA. Additionally, we analyzed the differences in therapeutic sensitivities between high- and low-risk groups concerning targeted inhibitor therapy and immunotherapy. Analysis of single-cell RNA sequencing was conducted of the ten hub DRGs. Of the ten genes, we found that DUSP2 and SLCO1B3 were differentially expressed in BLCA tissues and adjacent normal tissues, and were markedly associated with patients' prognosis. Functional experiments revealed that overexpression of DUSP2 or knockdown of SLCO1B3 significantly inhibited cell proliferation, migration, and invasion in BLCA cells. In all, we present a fresh disulfidptosis-related prognostic signature, which has a remarkable capacity to characterize the immunological landscape and prognosis of BLCA patients.

摘要

二硫键程序性细胞死亡是一种新发现的细胞死亡方式。然而,其在膀胱癌(BLCA)中的生物学机制尚不清楚。在本研究中,我们首先检测了 BLCA 中二硫键程序性细胞死亡相关基因(DRGs)的表达和突变。构建了两种与 DRGs 表达模式和免疫细胞浸润相关的二硫键程序性细胞死亡表型。基于二硫键程序性细胞死亡亚型之间的 10 个差异表达基因(DEGs)构建了二硫键程序性细胞死亡风险评分特征,可将患者分为高风险和低风险组。我们进一步证实,二硫键程序性细胞死亡风险评分特征可很好地预测 BLCA 患者的预后、免疫细胞浸润和免疫治疗疗效。此外,我们分析了高风险和低风险组在针对靶向抑制剂治疗和免疫治疗的治疗敏感性方面的差异。对十个关键 DRGs 的单细胞 RNA 测序进行了分析。在这 10 个基因中,我们发现 DUSP2 和 SLCO1B3 在 BLCA 组织和相邻正常组织中的表达存在差异,与患者的预后显著相关。功能实验表明,DUSP2 的过表达或 SLCO1B3 的敲低显著抑制了 BLCA 细胞的增殖、迁移和侵袭。总之,我们提出了一个新的与二硫键程序性细胞死亡相关的预后特征,该特征能够很好地描述 BLCA 患者的免疫景观和预后。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/91c1/11006495/37a26e384122/aging-16-205686-g001.jpg

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