Kumar Manish, Hada Alkesh, Somvanshi Vishal Singh, Singh Ashish Kumar, Yadava Yashwant Kumar, Jain Pradeep Kumar, Gaikwad Kishore, Sirohi Anil
Division of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, India.
Division of Crop Protection, ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan, Almora, Uttarakhand 263601, India.
J Nematol. 2024 Mar 20;56(1):20240007. doi: 10.2478/jofnem-2024-0007. eCollection 2024 Mar.
, the wheat seed gall nematode, causes the 'ear-cockle' or seed gall disease of wheat (), leading to an extensive decline of yield (30-70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of , which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.
小麦种子瘿线虫会引发小麦的“穗瘿”或种子瘿病,导致世界上欠发达小麦种植国家的产量大幅下降(30%-70%)。已知该线虫能在无水生物条件下存活长达32年。在此,我们展示了小麦种子瘿线虫的首个转录组组装结果,这将是理解负责线虫存活及地上植物寄生的基因的宝贵资源。最终的133.2 Mb组装结果由105606个开放阅读框(包括异构体)组成,针对线虫数据库的以下BUSCO评分:80.3%完整(16.4%单拷贝和63.9%重复),2.1%片段化,17.6%缺失。