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基于描述符开发用于准确预测核苷水凝胶的机器学习模型。

Developing a machine learning model for accurate nucleoside hydrogels prediction based on descriptors.

机构信息

State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Research Unit of Oral Carcinogenesis and Management, Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, 610041, PR China.

出版信息

Nat Commun. 2024 Mar 23;15(1):2603. doi: 10.1038/s41467-024-46866-9.

Abstract

Supramolecular hydrogels derived from nucleosides have been gaining significant attention in the biomedical field due to their unique properties and excellent biocompatibility. However, a major challenge in this field is that there is no model for predicting whether nucleoside derivative will form a hydrogel. Here, we successfully develop a machine learning model to predict the hydrogel-forming ability of nucleoside derivatives. The optimal model with a 71% (95% Confidence Interval, 0.69-0.73) accuracy is established based on a dataset of 71 reported nucleoside derivatives. 24 molecules are selected via the optimal model external application and the hydrogel-forming ability is experimentally verified. Among these, two rarely reported cation-independent nucleoside hydrogels are found. Based on their self-assemble mechanisms, the cation-independent hydrogel is found to have potential applications in rapid visual detection of Ag and cysteine. Here, we show the machine learning model may provide a tool to predict nucleoside derivatives with hydrogel-forming ability.

摘要

基于核苷的超分子水凝胶由于其独特的性质和优异的生物相容性,在生物医学领域引起了广泛关注。然而,该领域的一个主要挑战是,目前还没有模型可以预测核苷衍生物是否会形成水凝胶。在这里,我们成功开发了一种机器学习模型来预测核苷衍生物的水凝胶形成能力。基于 71 个已报道的核苷衍生物数据集,建立了一个具有 71%(95%置信区间,0.69-0.73)准确率的最优模型。通过最优模型的外部应用选择了 24 个分子,并通过实验验证了其水凝胶形成能力。其中,发现了两种很少报道的阳离子独立核苷水凝胶。根据它们的自组装机制,发现阳离子独立水凝胶在快速可视化检测 Ag 和半胱氨酸方面具有潜在的应用。在这里,我们展示了机器学习模型可以为预测具有水凝胶形成能力的核苷衍生物提供一种工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2868/10960799/b635d4f4c4fd/41467_2024_46866_Fig1_HTML.jpg

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