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评“一个新的与超级增强子相关的基因特征可预测乳腺癌的预后和免疫微环境”。

Comment on "A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer".

机构信息

Novin Genome (NG) Lab, Research and Development Center for Biotechnology, Shahrekord, Iran.

Young Researchers and Elite Club, Shahrekord Branch, Islamic Azad University, Shahrekord, Iran.

出版信息

BMC Cancer. 2024 Mar 25;24(1):377. doi: 10.1186/s12885-024-12124-w.

DOI:10.1186/s12885-024-12124-w
PMID:38528486
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10962133/
Abstract

The primary aim of this study is to critically evaluate and comment on the research presented in the article titled "A Novel Super-Enhancer-Related Gene Signature Predicts Prognosis and Immune Microenvironment for Breast Cancer" by Wu et al. Our specific objectives include assessing the methodology employed by the authors, particularly in regard to the utilization of a super-enhancer-related gene signature for breast cancer prognosis prediction. We propose the necessity of subgroup analysis to effectively address the heterogeneity in breast cancer subtypes, which is crucial for the applicability of the SERGs across diverse breast cancer cases. Additionally, we suggest conducting a more comprehensive immune panel study to deepen the understanding of how the immune microenvironment impacts breast cancer prognosis. Our commentary seeks to provide valuable insights into the strengths and weaknesses of the study, contributing to a more comprehensive understanding of its findings and potential clinical implications.

摘要

本研究的主要目的是批判性地评估和评论 Wu 等人撰写的题为“一种新型的超级增强子相关基因标志物可预测乳腺癌的预后和免疫微环境”的文章中呈现的研究。我们的具体目标包括评估作者所采用的方法,特别是在利用超级增强子相关基因标志物进行乳腺癌预后预测方面。我们提出有必要进行亚组分析,以有效地解决乳腺癌亚型的异质性问题,这对于 SERGs 在不同乳腺癌病例中的适用性至关重要。此外,我们建议进行更全面的免疫面板研究,以深入了解免疫微环境如何影响乳腺癌的预后。我们的评论旨在提供对该研究的优势和劣势的有价值的见解,有助于更全面地理解其研究结果和潜在的临床意义。

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本文引用的文献

1
A novel super-enhancer-related gene signature predicts prognosis and immune microenvironment for breast cancer.一种新型的超级增强子相关基因特征可预测乳腺癌的预后和免疫微环境。
BMC Cancer. 2023 Aug 18;23(1):776. doi: 10.1186/s12885-023-11241-2.
2
Tumor Mutational Burden in Breast Cancer: Current Evidence, Challenges, and Opportunities.乳腺癌中的肿瘤突变负荷:当前证据、挑战与机遇
Cancers (Basel). 2023 Aug 7;15(15):3997. doi: 10.3390/cancers15153997.
3
The integrative analysis based on super-enhancer related genes for predicting different subtypes and prognosis of patient with lower-grade glioma.基于超级增强子相关基因的综合分析用于预测低级别胶质瘤患者的不同亚型和预后。
Front Genet. 2023 Apr 7;14:1085584. doi: 10.3389/fgene.2023.1085584. eCollection 2023.
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Breast cancer heterogeneity and its implication in personalized precision therapy.乳腺癌异质性及其在个性化精准治疗中的意义。
Exp Hematol Oncol. 2023 Jan 9;12(1):3. doi: 10.1186/s40164-022-00363-1.
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A novel immune checkpoint-related gene signature for predicting overall survival and immune status in triple-negative breast cancer.一种用于预测三阴性乳腺癌总生存期和免疫状态的新型免疫检查点相关基因特征。
Transl Cancer Res. 2022 Jan;11(1):181-192. doi: 10.21037/tcr-21-1455.
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Metabolic Cooperation and Competition in the Tumor Microenvironment: Implications for Therapy.肿瘤微环境中的代谢合作与竞争:对治疗的启示
Front Oncol. 2017 Apr 12;7:68. doi: 10.3389/fonc.2017.00068. eCollection 2017.
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Re-engineering the Pancreas Tumor Microenvironment: A "Regenerative Program" Hacked.重塑胰腺肿瘤微环境:破解“再生程序”
Clin Cancer Res. 2017 Apr 1;23(7):1647-1655. doi: 10.1158/1078-0432.CCR-16-3275.
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Diversity of Breast Carcinoma: Histological Subtypes and Clinical Relevance.乳腺癌的多样性:组织学亚型与临床相关性
Clin Med Insights Pathol. 2015 Dec 21;8:23-31. doi: 10.4137/CPath.S31563. eCollection 2015.
9
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants.染色质伸展增强子状态驱动细胞特异性基因调控,并包含人类疾病风险变异。
Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17921-6. doi: 10.1073/pnas.1317023110. Epub 2013 Oct 14.
10
Master transcription factors and mediator establish super-enhancers at key cell identity genes.主转录因子和中介体在关键细胞身份基因上建立超级增强子。
Cell. 2013 Apr 11;153(2):307-19. doi: 10.1016/j.cell.2013.03.035.