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DOTAD:治疗性抗体可开发性数据库。

DOTAD: A Database of Therapeutic Antibody Developability.

作者信息

Li Wenzhen, Lin Hongyan, Huang Ziru, Xie Shiyang, Zhou Yuwei, Gong Rong, Jiang Qianhu, Xiang ChangCheng, Huang Jian

机构信息

School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.

School of Computer Science and Technology, Aba Teachers University, Aba, 623002, China.

出版信息

Interdiscip Sci. 2024 Sep;16(3):623-634. doi: 10.1007/s12539-024-00613-2. Epub 2024 Mar 26.

Abstract

The development of therapeutic antibodies is an important aspect of new drug discovery pipelines. The assessment of an antibody's developability-its suitability for large-scale production and therapeutic use-is a particularly important step in this process. Given that experimental assays to assess antibody developability in large scale are expensive and time-consuming, computational methods have been a more efficient alternative. However, the antibody research community faces significant challenges due to the scarcity of readily accessible data on antibody developability, which is essential for training and validating computational models. To address this gap, DOTAD (Database Of Therapeutic Antibody Developability) has been built as the first database dedicated exclusively to the curation of therapeutic antibody developability information. DOTAD aggregates all available therapeutic antibody sequence data along with various developability metrics from the scientific literature, offering researchers a robust platform for data storage, retrieval, exploration, and downloading. In addition to serving as a comprehensive repository, DOTAD enhances its utility by integrating a web-based interface that features state-of-the-art tools for the assessment of antibody developability. This ensures that users not only have access to critical data but also have the convenience of analyzing and interpreting this information. The DOTAD database represents a valuable resource for the scientific community, facilitating the advancement of therapeutic antibody research. It is freely accessible at http://i.uestc.edu.cn/DOTAD/ , providing an open data platform that supports the continuous growth and evolution of computational methods in the field of antibody development.

摘要

治疗性抗体的开发是新药研发流程的一个重要方面。评估抗体的可开发性——即其大规模生产和治疗用途的适用性——是这一过程中尤为重要的一步。鉴于大规模评估抗体可开发性的实验分析既昂贵又耗时,计算方法已成为一种更高效的替代方案。然而,由于缺乏易于获取的关于抗体可开发性的数据,抗体研究界面临着重大挑战,而这些数据对于训练和验证计算模型至关重要。为了填补这一空白,DOTAD(治疗性抗体可开发性数据库)已建成,它是首个专门致力于整理治疗性抗体可开发性信息的数据库。DOTAD汇总了所有可用的治疗性抗体序列数据以及来自科学文献的各种可开发性指标,为研究人员提供了一个强大的数据存储、检索、探索和下载平台。除了作为一个全面的知识库外,DOTAD还通过集成一个基于网络的界面来增强其效用,该界面具有用于评估抗体可开发性的先进工具。这确保了用户不仅能够获取关键数据,还能方便地分析和解释这些信息。DOTAD数据库是科学界的宝贵资源,有助于推动治疗性抗体研究的进展。它可通过http://i.uestc.edu.cn/DOTAD/免费访问,提供了一个开放的数据平台,支持抗体开发领域计算方法的持续发展和演进。

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