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从药用真菌代谢产物中鉴定针对非洲猪瘟病毒碱基切除修复途径蛋白的多靶点抑制剂。

identification of multi-target inhibitors from medicinal fungal metabolites against the base excision repair pathway proteins of African swine fever virus.

作者信息

Macalalad Mark Andrian B, Orosco Fredmoore L

机构信息

Virology and Vaccine Research and Development Program, Department of Science and Technology - Industrial Technology Development Institute Taguig Metro Manila 1632 Philippines

S&T Fellows Program, Department of Science and Technology Taguig Metro Manila 1632 Philippines.

出版信息

RSC Adv. 2024 Mar 26;14(14):10039-10055. doi: 10.1039/d4ra00819g. eCollection 2024 Mar 20.

Abstract

African swine fever virus (ASFV) has emerged as a serious threat to the pork industry resulting in significant economic losses and heightened concerns about food security. With no known cure presently available, existing control measures center on animal quarantine and culling. Considering the severity and challenges posed by ASFV, it is imperative to discover new treatment strategies and implement additional measures to prevent its further spread. This study recognized the potential of 1830 fungal metabolites from medicinal fungi as antiviral compounds against base excision repair (BER) proteins of ASFV, specifically AP, PolX, and Lig. A wide array of computer-aided drug discovery techniques were employed to carry out the virtual screening process: ADMET profiling revealed 319 molecules with excellent bioavailability and toxicity properties; consensus docking identified the 10 best-scoring ligands against all targets; molecular dynamics simulation elucidated the stability of the protein-ligand complexes; and MM/PB(GB)SA energy calculations predicted the binding energies of the compounds as well as the key residues integral to binding. Through methods, we identified two theoretical lead candidates against AP, four against Lig, and five against PolX. Two compounds, methyl ganoderate E and antcamphin M, exhibited potential multi-target inhibitory characteristics against PolX and Lig, while compound cochlactone A showed promising antagonistic results against all three BER proteins. It is recommended to prioritize these hit compounds in future and studies to validate their potential as antiviral drugs against ASFV.

摘要

非洲猪瘟病毒(ASFV)已成为猪肉行业的严重威胁,导致重大经济损失,并加剧了人们对食品安全的担忧。由于目前尚无已知的治愈方法,现有的控制措施主要集中在动物检疫和扑杀上。考虑到ASFV带来的严重性和挑战,发现新的治疗策略并采取额外措施防止其进一步传播势在必行。本研究认识到来自药用真菌的1830种真菌代谢产物作为抗ASFV碱基切除修复(BER)蛋白(特别是AP、PolX和Lig)的抗病毒化合物的潜力。采用了一系列计算机辅助药物发现技术来进行虚拟筛选过程:ADMET分析揭示了319种具有优异生物利用度和毒性特性的分子;共识对接确定了针对所有靶点得分最高的10种配体;分子动力学模拟阐明了蛋白质-配体复合物的稳定性;MM/PB(GB)SA能量计算预测了化合物的结合能以及结合所必需的关键残基。通过这些方法,我们确定了两种针对AP的理论先导候选物、四种针对Lig的候选物和五种针对PolX的候选物。两种化合物,灵芝酸E甲酯和抗樟脑素M,对PolX和Lig表现出潜在的多靶点抑制特性,而化合物共氯内酯A对所有三种BER蛋白均显示出有希望的拮抗结果。建议在未来的研究中优先考虑这些命中化合物,以验证它们作为抗ASFV抗病毒药物的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5021/10964135/1f60008cb471/d4ra00819g-f1.jpg

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