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泛癌症分析表明与连接蛋白相关的全球机械化学改变。

Pan-cancer analyses suggest kindlin-associated global mechanochemical alterations.

机构信息

Department of Chemical and Biological Sciences, S.N. Bose National Centre for Basic Sciences, Kolkata, West Bengal, 700106, India.

Department of Biology, Trivedi School of Biosciences, Ashoka University, Sonepat, Haryana, 131029, India.

出版信息

Commun Biol. 2024 Mar 28;7(1):372. doi: 10.1038/s42003-024-06044-5.

Abstract

Kindlins serve as mechanosensitive adapters, transducing extracellular mechanical cues to intracellular biochemical signals and thus, their perturbations potentially lead to cancer progressions. Despite the kindlin involvement in tumor development, understanding their genetic and mechanochemical characteristics across different cancers remains elusive. Here, we thoroughly examined genetic alterations in kindlins across more than 10,000 patients with 33 cancer types. Our findings reveal cancer-specific alterations, particularly prevalent in advanced tumor stage and during metastatic onset. We observed a significant co-alteration between kindlins and mechanochemical proteome in various tumors through the activation of cancer-related pathways and adverse survival outcomes. Leveraging normal mode analysis, we predicted structural consequences of cancer-specific kindlin mutations, highlighting potential impacts on stability and downstream signaling pathways. Our study unraveled alterations in epithelial-mesenchymal transition markers associated with kindlin activity. This comprehensive analysis provides a resource for guiding future mechanistic investigations and therapeutic strategies targeting the roles of kindlins in cancer treatment.

摘要

Kindlins 作为机械敏感性接头,将细胞外机械线索转导为细胞内生化信号,因此,它们的扰动可能导致癌症进展。尽管 kindlin 参与了肿瘤的发生,但对于它们在不同癌症中的遗传和机械化学特性的理解仍然难以捉摸。在这里,我们深入研究了超过 10000 名患有 33 种癌症类型的患者的 kindlins 中的遗传改变。我们的研究结果揭示了癌症特异性的改变,特别是在晚期肿瘤阶段和转移发生时更为普遍。我们观察到各种肿瘤中 kindlins 和机械化学蛋白质组之间的显著共同改变,这是通过激活与癌症相关的途径和不良生存结果来实现的。利用正常模式分析,我们预测了癌症特异性 kindlin 突变的结构后果,突出了对稳定性和下游信号通路的潜在影响。我们的研究揭示了与 kindlin 活性相关的上皮-间充质转化标志物的改变。这项全面的分析为指导未来针对 kindlins 在癌症治疗中的作用的机制研究和治疗策略提供了资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8922/10978987/17c1d57c2e71/42003_2024_6044_Fig1_HTML.jpg

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