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具有杀血吸虫活性化合物的计算机辅助发现

Computer-Assisted Discovery of Compounds With Schistosomicidal Activity.

作者信息

Shoko Ryman, Mandivenga Farirai

机构信息

Department of Biology, School of Natural Science and Mathematics, Chinhoyi University of Technology, Chinhoyi, Zimbabwe.

出版信息

Bioinform Biol Insights. 2024 Mar 27;18:11779322241240651. doi: 10.1177/11779322241240651. eCollection 2024.

DOI:10.1177/11779322241240651
PMID:38550337
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10976507/
Abstract

Schistosomiasis, otherwise known as bilharzia or snail fever, is a disease that usually affects poor people and people exposed to poor sanitation. The disease affects over 200 million people worldwide annually. Schistosomiasis has been treated using a single drug, praziquantel, since the 1970s and this is resulting in schistosomes becoming resistant. Therefore, there is an urgent need to develop new antischistosoma drugs and vaccines. This study focuses on identifying potential antischistosomal compounds from the plant . We virtually screened a library of 163 compounds by docking against sulfotransferase (SULT) using the PyRx software. Docking scores ranged from -4.7 to -9.3 kcal/mol. Compounds with binding affinity of -7.6 or stronger were subjected to drug-likeness assessments using the DataWarrior software. We also employed the PAINS removal tool to filter off false-positive results. Twelve compounds passed the drug-likeness screen, and these were subjected to in silico toxicity predictions to determine their mutagenic, tumorigenic and reproductive potential. Seven compounds were predicted to be nontoxic. After considering the toxicity analysis results and drug scores of the compounds, we identified rosmarinic acid and hispidulin as qualifying for further evaluation as potential drugs against schistosomiasis. Free energy calculations using the fastDRH webserver and molecular dynamics simulations using CABS-flex showed that the receptor-ligand complexes for the 2 lead compounds are stable under physiological conditions. We recommend that rosmarinic acid and hispidulin be used as hit compounds for the development of potential antischistosomal drugs.

摘要

血吸虫病,又称裂体吸虫病或蜗牛热,是一种通常影响贫困人口和接触卫生条件差环境的人群的疾病。全球每年有超过2亿人受该疾病影响。自20世纪70年代以来,血吸虫病一直使用单一药物吡喹酮进行治疗,这导致血吸虫产生耐药性。因此,迫切需要开发新的抗血吸虫药物和疫苗。本研究聚焦于从植物中鉴定潜在的抗血吸虫化合物。我们使用PyRx软件通过与磺基转移酶(SULT)对接,对163种化合物的文库进行了虚拟筛选。对接分数范围为-4.7至-9.3千卡/摩尔。使用DataWarrior软件对结合亲和力为-7.6或更强的化合物进行类药性质评估。我们还使用PAINS去除工具过滤掉假阳性结果。12种化合物通过了类药性质筛选,并对其进行了计算机模拟毒性预测,以确定它们的致突变性、致癌性和生殖潜力。预测有7种化合物无毒。在考虑化合物的毒性分析结果和药物分数后,我们确定迷迭香酸和滨蓟黄素符合作为抗血吸虫病潜在药物进行进一步评估的条件。使用fastDRH网络服务器进行的自由能计算以及使用CABS-flex进行的分子动力学模拟表明,这两种先导化合物的受体-配体复合物在生理条件下是稳定的。我们建议将迷迭香酸和滨蓟黄素用作开发潜在抗血吸虫药物的命中化合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/d845da9ccaf8/10.1177_11779322241240651-fig10.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/d845da9ccaf8/10.1177_11779322241240651-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/4eef6b1e7e66/10.1177_11779322241240651-fig1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/0e998b8baba1/10.1177_11779322241240651-fig4.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/483f67189ab8/10.1177_11779322241240651-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/9408e0802ac2/10.1177_11779322241240651-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3de4/10976507/d845da9ccaf8/10.1177_11779322241240651-fig10.jpg

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