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Retriever-SNX17组装及内体分选的结构基础

Structural basis for Retriever-SNX17 assembly and endosomal sorting.

作者信息

Singla Amika, Boesch Daniel J, Joyce Fung Ho Yee, Ngoka Chigozie, Enriquez Avery S, Song Ran, Kramer Daniel A, Han Yan, Juneja Puneet, Billadeau Daniel D, Bai Xiaochen, Chen Zhe, Turer Emre E, Burstein Ezra, Chen Baoyu

机构信息

Department of Internal Medicine, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390, USA.

Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, 2437 Pammel Drive, Ames, IA 50011, USA.

出版信息

bioRxiv. 2024 Mar 13:2024.03.12.584676. doi: 10.1101/2024.03.12.584676.


DOI:10.1101/2024.03.12.584676
PMID:38559023
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10980035/
Abstract

During endosomal recycling, Sorting Nexin 17 (SNX17) facilitates the transport of numerous membrane cargo proteins by tethering them to the Retriever complex. Despite its importance, the mechanisms underlying this interaction have remained elusive. Here, we report the structure of the Retriever-SNX17 complex determined using cryogenic electron microscopy (cryo-EM). Our structure reveals that the C-terminal tail of SNX17 engages with a highly conserved interface between the VPS35L and VPS26C subunits of Retriever. Through comprehensive biochemical, cellular, and proteomic analyses, we demonstrate that disrupting this interface impairs the Retriever-SNX17 interaction, subsequently affecting the recycling of SNX17-dependent cargos and altering the composition of the plasma membrane proteome. Intriguingly, we find that the SNX17-binding pocket on Retriever can be utilized by other ligands that share a consensus acidic C-terminal tail motif. By showing how SNX17 is linked to Retriever, our findings uncover a fundamental mechanism underlying endosomal trafficking of critical cargo proteins and reveal a mechanism by which Retriever can engage with other regulatory factors.

摘要

在内体循环过程中,分选连接蛋白17(SNX17)通过将众多膜转运货物蛋白拴系到Retriever复合物上,促进其运输。尽管其很重要,但这种相互作用的潜在机制仍不清楚。在这里,我们报告了使用低温电子显微镜(cryo-EM)确定的Retriever-SNX17复合物的结构。我们的结构表明,SNX17的C末端尾巴与Retriever的VPS35L和VPS26C亚基之间的高度保守界面结合。通过全面的生化、细胞和蛋白质组学分析,我们证明破坏该界面会损害Retriever-SNX17相互作用,随后影响依赖SNX17的货物的循环,并改变质膜蛋白质组的组成。有趣的是,我们发现Retriever上的SNX17结合口袋可被其他具有共有酸性C末端尾巴基序的配体利用。通过展示SNX17如何与Retriever相连,我们的发现揭示了关键货物蛋白内体运输的基本机制,并揭示了Retriever与其他调节因子相互作用的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/666623cdf070/nihpp-2024.03.12.584676v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/4a84e7ee7565/nihpp-2024.03.12.584676v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/958f03350c0c/nihpp-2024.03.12.584676v1-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/f09141f17a79/nihpp-2024.03.12.584676v1-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/a8e8a8dd6dc1/nihpp-2024.03.12.584676v1-f0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/df7c166db43f/nihpp-2024.03.12.584676v1-f0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/05d80e2229a0/nihpp-2024.03.12.584676v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/8ae0715b2d4c/nihpp-2024.03.12.584676v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/24203010cf69/nihpp-2024.03.12.584676v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/199ab0f6ee26/nihpp-2024.03.12.584676v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/d912b54458e3/nihpp-2024.03.12.584676v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/666623cdf070/nihpp-2024.03.12.584676v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/4a84e7ee7565/nihpp-2024.03.12.584676v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/958f03350c0c/nihpp-2024.03.12.584676v1-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/f09141f17a79/nihpp-2024.03.12.584676v1-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/a8e8a8dd6dc1/nihpp-2024.03.12.584676v1-f0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/df7c166db43f/nihpp-2024.03.12.584676v1-f0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/05d80e2229a0/nihpp-2024.03.12.584676v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/8ae0715b2d4c/nihpp-2024.03.12.584676v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/24203010cf69/nihpp-2024.03.12.584676v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/199ab0f6ee26/nihpp-2024.03.12.584676v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/d912b54458e3/nihpp-2024.03.12.584676v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5743/10980035/666623cdf070/nihpp-2024.03.12.584676v1-f0006.jpg

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本文引用的文献

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Nat Struct Mol Biol. 2024-6

[2]
Structural organization of the retriever-CCC endosomal recycling complex.

Nat Struct Mol Biol. 2024-6

[3]
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[4]
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[5]
An evolving understanding of sorting signals for endosomal retrieval.

iScience. 2022-5-20

[6]
SNX27-Retromer directly binds ESCPE-1 to transfer cargo proteins during endosomal recycling.

PLoS Biol. 2022-4

[7]
SNX27-FERM-SNX1 complex structure rationalizes divergent trafficking pathways by SNX17 and SNX27.

Proc Natl Acad Sci U S A. 2021-9-7

[8]
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing.

Commun Biol. 2021-7-15

[9]
Highly accurate protein structure prediction with AlphaFold.

Nature. 2021-8

[10]
Sorting Nexins in Protein Homeostasis.

Cells. 2020-12-24

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