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研究一种具有增强的细胞外电子转移能力的突变体,揭示了一种新型 II 型 NADH 脱氢酶的独特作用。

Scrutinizing a mutant with enhanced capacity for extracellular electron transfer reveals a unique role for a novel type-II NADH dehydrogenase.

机构信息

National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

出版信息

Appl Environ Microbiol. 2024 May 21;90(5):e0041424. doi: 10.1128/aem.00414-24. Epub 2024 Apr 2.

Abstract

a lactic acid bacterium used in food fermentations and commonly found in the human gut, is known to possess a fermentative metabolism. , however, has been demonstrated to transfer metabolically generated electrons to external electron acceptors, a process termed extracellular electron transfer (EET). Here, we investigated an mutant with an unusually high capacity for EET that was obtained in an adaptive laboratory evolution (ALE) experiment. First, we investigated how global gene expression had changed, and found that amino acid metabolism and nucleotide metabolism had been affected significantly. One of the most significantly upregulated genes encoded the NADH dehydrogenase NoxB. We found that this upregulation was due to a mutation in the promoter region of NoxB, which abolished carbon catabolite repression. A unique role of NoxB in EET could be attributed and it was directly verified, for the first time, that NoxB could support respiration in . NoxB, was shown to be a novel type-II NADH dehydrogenase that is widely distributed among gut microorganisms. This work expands our understanding of EET in Gram-positive electroactive microorganisms and the special significance of a novel type-II NADH dehydrogenase in EET.IMPORTANCEElectroactive microorganisms with extracellular electron transfer (EET) ability play important roles in biotechnology and ecosystems. To date, there have been many investigations aiming at elucidating the mechanisms behind EET, and determining the relevance of EET for microorganisms in different niches. However, how EET can be enhanced and harnessed for biotechnological applications has been less explored. Here, we compare the transcriptomes of an EET-enhanced mutant with its parent and elucidate the underlying reason for its superior performance. We find that one of the most significantly upregulated genes is the gene encoding the NADH dehydrogenase NoxB, and that upregulation is due to a mutation in the catabolite-responsive element that abolishes carbon catabolite repression. We demonstrate that NoxB has a special role in EET, and furthermore show that it supports respiration to oxygen, which has never been done previously. In addition, a search reveals that this novel NoxB-type NADH dehydrogenase is widely distributed among gut microorganisms.

摘要

一种用于食品发酵的乳酸菌,通常存在于人类肠道中,已知具有发酵代谢。然而,已经证明它可以将代谢产生的电子转移到外部电子受体,这个过程称为细胞外电子转移(EET)。在这里,我们研究了一种在适应性实验室进化(ALE)实验中获得的具有异常高 EET 能力的突变体。首先,我们研究了全局基因表达如何发生变化,发现氨基酸代谢和核苷酸代谢受到了显著影响。上调最显著的基因之一编码 NADH 脱氢酶 NoxB。我们发现这种上调是由于 NoxB 启动子区域的突变,该突变消除了碳分解代谢物的抑制作用。可以归因于 NoxB 在 EET 中的独特作用,并首次直接验证了 NoxB 可以支持 的呼吸作用。NoxB,被证明是一种新型的 II 型 NADH 脱氢酶,在肠道微生物中广泛分布。这项工作扩展了我们对革兰氏阳性电活性微生物中 EET 的理解,以及新型 II 型 NADH 脱氢酶在 EET 中的特殊意义。

重要性

具有细胞外电子转移(EET)能力的电活性微生物在生物技术和生态系统中发挥着重要作用。迄今为止,已经有许多研究旨在阐明 EET 的机制,并确定 EET 对不同生态位微生物的相关性。然而,如何增强 EET 并将其用于生物技术应用的研究还比较少。在这里,我们比较了 EET 增强的 突变体与其亲本的转录组,并阐明了其优越性能的潜在原因。我们发现上调最显著的基因之一是编码 NADH 脱氢酶 NoxB 的基因,而上调是由于碳分解代谢物响应元件的突变,该突变消除了碳分解代谢物的抑制作用。我们证明了 NoxB 在 EET 中具有特殊作用,并且进一步表明它支持对氧气的呼吸作用,这是以前从未做过的。此外,搜索表明这种新型 NoxB 型 NADH 脱氢酶在肠道微生物中广泛分布。

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