Department of Chemistry, Boston University, Boston, MA 02215, USA; Program in Biomolecular Pharmacology, Boston University School of Medicine, Boston, MA 02118, USA.
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Trends Biochem Sci. 2019 Jan;44(1):7-20. doi: 10.1016/j.tibs.2018.09.013. Epub 2018 Oct 15.
Monotopic membrane proteins, classified by topology, are proteins that embed into a single face of the membrane. These proteins are generally underrepresented in the Protein Data Bank (PDB), but the past decade of research has revealed new examples that allow the description of generalizable features. This Opinion article summarizes shared characteristics including oligomerization states, modes of membrane association, mechanisms of interaction with hydrophobic or amphiphilic substrates, and homology to soluble folds. We also discuss how associations of monotopic enzymes in pathways can be used to promote substrate specificity and product composition. These examples highlight the challenges in structure determination specific to this class of proteins, but also the promise of new understanding from future study of these proteins that reside at the interface.
单域跨膜蛋白根据拓扑结构进行分类,是嵌入膜单一表面的蛋白质。这些蛋白质在蛋白质数据库 (PDB) 中的代表性不足,但过去十年的研究揭示了新的例子,允许描述可推广的特征。本文观点总结了包括寡聚状态、与膜结合的模式、与疏水性或两亲性底物相互作用的机制以及与可溶性折叠的同源性等共享特征。我们还讨论了途径中单域酶的关联如何用于促进底物特异性和产物组成。这些例子突出了此类蛋白质结构测定的具体挑战,但也预示着未来对这些位于界面的蛋白质的研究将有新的理解。