Faculty of Pharmacy, Yasuda Women's University, Hiroshima, Japan.
Hiroshima Synchrotron Radiation Center, Hiroshima University, Hiroshima, Japan.
Appl Environ Microbiol. 2024 May 21;90(5):e0011824. doi: 10.1128/aem.00118-24. Epub 2024 Apr 3.
Bacteria have two routes for the l-methionine biosynthesis. In one route called the direct sulfuration pathway, acetylated l-homoserine is directly converted into l-homocysteine. The reaction using HS as the second substrate is catalyzed by a pyridoxal 5'-phosphate-dependent enzyme, -acetylhomoserine sulfhydrylase (OAHS). In the present study, we determined the enzymatic functions and the structures of OAHS from (OAHS). The OAHS enzyme exhibited the highest catalytic activity under the weak acidic pH condition. In addition, crystallographic analysis revealed that the enzyme takes two distinct structures, open and closed forms. In the closed form, two acidic residues are sterically clustered. The proximity may cause the electrostatic repulsion, inhibiting the formation of the closed form under the neutral to the basic pH conditions. We concluded that the pH-dependent regulation mechanism using the two acidic residues contributes to the acidophilic feature of the enzyme.
In the present study, we can elucidate the pH-dependent regulation mechanism of the acidophilic OAHS. The acidophilic feature of the enzyme is caused by the introduction of an acidic residue to the neighborhood of the key acidic residue acting as a switch for the structural interconversion. The strategy may be useful in the field of protein engineering to change the optimal pH of the enzymes. In addition, this study may be useful for the development of antibacterial drugs because the l-methionine synthesis essential for bacteria is inhibited by the OAHS inhibitors. The compounds that can inhibit the interconversion between the open and closed forms of OAHS may become antibacterial drugs.
细菌有两条途径可以合成 l-蛋氨酸。在一条称为直接硫化途径的途径中,乙酰化 l-高丝氨酸直接转化为 l-同型半胱氨酸。使用 HS 作为第二底物的反应由依赖吡哆醛 5'-磷酸的酶 -乙酰高丝氨酸硫羟化酶(OAHS)催化。在本研究中,我们确定了 OAHS 的酶学功能和结构。OAHS 酶在弱酸性 pH 条件下表现出最高的催化活性。此外,晶体学分析表明,该酶具有两种截然不同的结构,开放和闭合形式。在闭合形式中,两个酸性残基在空间上聚集在一起。这种接近可能导致静电排斥,抑制中性到碱性 pH 条件下闭合形式的形成。我们得出结论,使用两个酸性残基的 pH 依赖性调节机制有助于酶的嗜酸特性。
在本研究中,我们可以阐明嗜酸 OAHS 的 pH 依赖性调节机制。酶的嗜酸特性是由于将酸性残基引入到作为结构互变开关的关键酸性残基附近引起的。该策略可能在蛋白质工程领域有用,可以改变酶的最佳 pH 值。此外,这项研究可能对开发抗菌药物有用,因为 l-蛋氨酸的合成对细菌是必不可少的,而 OAHS 抑制剂可以抑制细菌的 l-蛋氨酸合成。能够抑制 OAHS 开放和闭合形式之间互变的化合物可能成为抗菌药物。