Huzhou Center for Disease Control and Prevention, Huzhou, China.
Anji County Center for Disease Control and Prevention, Huzhou, China.
PLoS One. 2024 Apr 4;19(4):e0301623. doi: 10.1371/journal.pone.0301623. eCollection 2024.
This study aimed to investigate the cause of a foodborne disease outbreak in Huzhou on August 14, 2023. Multiple enteropathogens were detected using FilmArray, and the pathogen was subsequently isolated and cultured from anal swabs of the cases and stream water. The isolated strains were identified using VITEK MS, and antimicrobial susceptibility test, pulsed field gel electrophoresis (PFGE) molecular typing, and whole genome sequencing (WGS) were performed on the isolates of Plesiomonas shigelloides. Gene annotation and sequence alignment were used to analyze the virulence genes and drug resistance genes of the strains. A phylogenetic tree was constructed based on single nucleotide polymorphism (SNP), and homology analysis was conducted to trace the origin of P. shigelloides. A total of 7 strains of P.shigelloides were isolated, with 3 from stream water and 4 from anal swabs. All 7 strains exhibited the same PFGE pattern and showed resistance to amikacin, trimethoprim-sulfamethoxazole, chloramphenicol, tetracycline, cefazolin, streptomycin, and florfenicol. The isolated strains carried the same resistance genes and virulence factors. In the sequences of the isolated strains from this outbreak, 11 mutation sites were detected. The phylogenetic tree based on SNP sites showed that these strains were homologous. This foodborne disease outbreak caused by P.shigelloides was the first reported in Huzhou. WGS can be used as a complementary method to PFGE for epidemiological investigations of disease outbreaks.
本研究旨在调查 2023 年 8 月 14 日湖州一起食源性疾病暴发的原因。采用 FilmArray 检测到多种肠道病原体,随后从病例的肛拭子和溪流水中分离和培养病原体。采用 VITEK MS 鉴定分离株,对志贺邻单胞菌进行药敏试验、脉冲场凝胶电泳(PFGE)分子分型和全基因组测序(WGS)。对志贺邻单胞菌的分离株进行基因注释和序列比对,分析其毒力基因和耐药基因。基于单核苷酸多态性(SNP)构建系统发育树,进行同源性分析以追溯志贺邻单胞菌的来源。共分离出 7 株志贺邻单胞菌,其中 3 株来自溪流水,4 株来自肛拭子。7 株均表现出相同的 PFGE 图谱,对阿米卡星、复方新诺明、氯霉素、四环素、头孢唑林、链霉素和氟苯尼考耐药。分离株携带相同的耐药基因和毒力因子。在本起暴发的分离株序列中,检测到 11 个突变位点。基于 SNP 位点的系统发育树显示这些菌株具有同源性。本次由志贺邻单胞菌引起的食源性疾病暴发为湖州首例报告。WGS 可作为 PFGE 对疾病暴发进行流行病学调查的补充方法。