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基于网络药理学和分子对接技术解析复方丹参滴丸抗心绞痛的分子机制。

Elucidation of the Molecular Mechanism of Compound Danshen Dripping Pills against Angina Pectoris based on Network Pharmacology and Molecular Docking.

机构信息

Department of Pharmacy, Beijing Anzhen Hospital, Capital Medical University, Beijing, China.

School of Pharmaceutical Sciences, Capital Medical University, Beijing, China.

出版信息

Curr Pharm Des. 2024;30(16):1247-1264. doi: 10.2174/0113816128287109240321074628.

Abstract

BACKGROUND

Compound Danshen dripping pills (CDDP), a traditional Chinese medicine, has had an extensive application in the treatment of angina pectoris (AP) in China. However, research on the bioactive ingredients and underlying mechanisms of CDDP in AP remains unclear.

OBJECTIVE

In the present study, we explored the major chemical components and potential molecular mechanisms linked to the anti-angina effects of CDDP through the application of network pharmacology and molecular docking.

METHODS

The potential targets of active ingredients in CDDP were sourced from the Traditional Chinese Medicine Systems Pharmacology Database (TCMSP) and the Swiss Target Prediction Database (STPD). Additionally, targets related to angina pectoris (AP) were retrieved from various databases, including Gene Cards, DisGeNET, Dis Genet, the Drug Bank database (DBD), and the Therapeutic Target Database (TDD). Protein- protein interaction networks were also established, and core targets were identified based on their topological significance. GO enrichment analysis and KEGG pathway analysis were conducted using the R software. Interactions between active ingredients and potential targets selected through the above process were investigated through molecular docking.

RESULTS

Seventy-six active ingredients were selected with the following criteria: OB ≥ 30%, DL ≥ 0.18. 383 targets of CDDP and 1488 targets on AP were gathered, respectively. Afterwards, 194 common targets of CDDP and anti-AP targets were defined, of which 12 were core targets. GO enrichment analysis indicated that CDDP acted on AP by response to lipopolysaccharide, regulating the reactive oxygen species and metal ion metabolism, and epithelial cell proliferation. In addition, KEGG enrichment analysis indicated that the signaling pathways were notably enriched in lipid and atherosclerosis, fluid shear stress and atherosclerosis, IL-17 signaling pathway, EGFR tyrosine kinase inhibitor resistance, PI3K-Akt signaling pathway, and TNF signaling pathway. Moreover, the molecular docking manifested excellent binding capacity between the active ingredients and targets on AP.

CONCLUSION

This study comprehensively illustrated the bioactive, potential targets, and molecular mechanisms of CDDP against AP, offering fresh perspectives into the molecular mechanisms of CDDP in preventing and treating AP.

摘要

背景

复方丹参滴丸是一种中药,在中国广泛应用于心绞痛(AP)的治疗。然而,关于 CDDP 治疗 AP 的生物活性成分和潜在机制的研究仍不清楚。

目的

本研究通过网络药理学和分子对接技术,探讨 CDDP 抗心绞痛的主要化学成分和潜在分子机制。

方法

从中药系统药理学数据库(TCMSP)和瑞士靶点预测数据库(STPD)中获取 CDDP 中活性成分的潜在靶点,从 GeneCards、DisGeNET、DisGenet、药物银行数据库(DBD)和治疗靶点数据库(TDD)等多个数据库中检索与心绞痛相关的靶点。构建蛋白质-蛋白质相互作用网络,并根据拓扑重要性确定核心靶点。使用 R 软件进行 GO 富集分析和 KEGG 通路分析。通过分子对接研究上述过程中选择的活性成分与潜在靶点之间的相互作用。

结果

根据 OB≥30%、DL≥0.18 的标准,筛选出 76 种活性成分。分别收集到 CDDP 的 383 个靶点和 AP 的 1488 个靶点,随后确定了 194 个 CDDP 和抗 AP 靶点的共同靶点,其中 12 个为核心靶点。GO 富集分析表明,CDDP 通过对脂多糖的反应、调节活性氧和金属离子代谢以及上皮细胞增殖来作用于 AP。此外,KEGG 富集分析表明,信号通路显著富集在脂质和动脉粥样硬化、流体剪切应激和动脉粥样硬化、IL-17 信号通路、表皮生长因子受体酪氨酸激酶抑制剂耐药、PI3K-Akt 信号通路和 TNF 信号通路中。此外,分子对接表明活性成分与 AP 靶点之间具有良好的结合能力。

结论

本研究全面阐述了 CDDP 防治 AP 的生物活性、潜在靶点和分子机制,为 CDDP 预防和治疗 AP 的分子机制提供了新的视角。

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