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牛呼吸系统疾病主要致病耐药基因及药物靶点检测芯片的研制

Development of a detection chip for major pathogenic drug-resistant genes and drug targets in bovine respiratory system diseases.

作者信息

Qi Jie, Li Penghui, Yan Yasong, Li Gongmei, Kong Lingcong

机构信息

College of Veterinary Medicine, Jilin Agricultural University, Changchun, China.

出版信息

Open Life Sci. 2024 Mar 26;19(1):20220778. doi: 10.1515/biol-2022-0778. eCollection 2024.

DOI:10.1515/biol-2022-0778
PMID:38585641
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10997054/
Abstract

Bovine respiratory disease (BRD) is a significant veterinary challenge, often exacerbated by pathogen resistance, hindering effective treatment. Traditional testing methods for primary pathogens - , , and  - are notably time-consuming and lack the rapidity required for effective clinical decision-making. This study introduces a TaqMan MGB probe detection chip, utilizing fluorescent quantitative PCR, targeting key BRD pathogens and associated drug-resistant genes and sites. We developed 94 specific probes and primers, embedded into a detection chip, demonstrating notable specificity, repeatability, and sensitivity, reducing testing time to under 1 h. Additionally, we formulated probes to detect mutations in the quinolone resistance-determining region, associated with fluoroquinolone resistance in BRD pathogens. The chip exhibited robust sensitivity and specificity, enabling rapid detection of drug-resistant mutations in clinical samples. This methodology significantly expedites the diagnostic process for BRD and sensitive drug screening, presenting a practical advancement in the field.

摘要

牛呼吸道疾病(BRD)是一项重大的兽医挑战,常常因病原体耐药性而加剧,阻碍了有效治疗。针对主要病原体( 、 和 )的传统检测方法耗时显著,缺乏有效临床决策所需的快速性。本研究引入了一种TaqMan MGB探针检测芯片,利用荧光定量PCR,靶向关键的BRD病原体以及相关耐药基因和位点。我们开发了94种特异性探针和引物,嵌入到检测芯片中,显示出显著的特异性、重复性和灵敏度,将检测时间缩短至1小时以内。此外,我们还设计了用于检测喹诺酮耐药决定区突变的探针,这些突变与BRD病原体中的氟喹诺酮耐药性相关。该芯片展现出强大的灵敏度和特异性,能够快速检测临床样本中的耐药突变。这种方法显著加快了BRD的诊断过程和敏感药物筛选,是该领域一项切实的进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/5850cd346eda/j_biol-2022-0778-fig007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/c3231f98787c/j_biol-2022-0778-fig001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/25680f52ad20/j_biol-2022-0778-fig002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/677e3d6b8ea8/j_biol-2022-0778-fig003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/8cb06881163b/j_biol-2022-0778-fig004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/f5f1ff71b30f/j_biol-2022-0778-fig005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/c65ccb2c8e19/j_biol-2022-0778-fig006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/5850cd346eda/j_biol-2022-0778-fig007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/c3231f98787c/j_biol-2022-0778-fig001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/25680f52ad20/j_biol-2022-0778-fig002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/677e3d6b8ea8/j_biol-2022-0778-fig003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/8cb06881163b/j_biol-2022-0778-fig004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/f5f1ff71b30f/j_biol-2022-0778-fig005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/c65ccb2c8e19/j_biol-2022-0778-fig006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/228c/10997054/5850cd346eda/j_biol-2022-0778-fig007.jpg

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