Holland Steven C, Smith Matthew F, Holland LaRinda A, Maqsood Rabia, Hu James C, Murugan Vel, Driver Erin M, Halden Rolf U, Lim Efrem S
Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Virginia G. Piper Center for Personalized Diagnostics, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
medRxiv. 2024 Mar 28:2024.03.27.24304990. doi: 10.1101/2024.03.27.24304990.
Areas of dense population congregation are prone to experience respiratory virus outbreaks. We monitored wastewater and clinic patients for the presence of respiratory viruses on a large, public university campus. Campus sewer systems were monitored in 16 locations for the presence of viruses using next generation sequencing over 22 weeks in 2023. During this period, we detected a surge in human adenovirus (HAdV) levels in wastewater. Hence, we initiated clinical surveillance at an on-campus clinic from patients presenting with acute respiratory infection. From whole genome sequencing of 123 throat and/or nasal swabs collected, we identified an outbreak of HAdV, specifically of HAdV-E4 and HAdV-B7 genotypes overlapping in time. The temporal dynamics and proportions of HAdV genotypes found in wastewater were corroborated in clinical infections. We tracked specific single nucleotide polymorphisms (SNPs) found in clinical virus sequences and showed that they arose in wastewater signals concordant with the time of clinical presentation, linking community transmission of HAdV to the outbreak. This study demonstrates how wastewater-based epidemiology can be integrated with surveillance at ambulatory healthcare settings to monitor areas prone to respiratory virus outbreaks and provide public health guidance.
人口密集聚集区容易发生呼吸道病毒暴发。我们在一所大型公立大学校园对废水和门诊患者进行了呼吸道病毒监测。2023年,我们在校园污水系统的16个地点使用下一代测序技术对病毒的存在情况进行了为期22周的监测。在此期间,我们检测到废水中人腺病毒(HAdV)水平激增。因此,我们对校园门诊出现急性呼吸道感染的患者开展了临床监测。通过对采集的123份咽喉和/或鼻拭子进行全基因组测序,我们确定了一起HAdV暴发,具体为HAdV-E4和HAdV-B7基因型在时间上重叠的暴发。在临床感染中证实了废水中发现的HAdV基因型的时间动态和比例。我们追踪了临床病毒序列中发现的特定单核苷酸多态性(SNP),并表明它们出现在与临床表现时间一致的废水信号中,将HAdV的社区传播与此次暴发联系起来。这项研究展示了基于废水的流行病学如何与门诊医疗环境中的监测相结合,以监测容易发生呼吸道病毒暴发的地区并提供公共卫生指导。