Genetic characterization, structural analysis, and detection of positive selection in small heat shock proteins of Cypriniformes and Clupeiformes.

作者信息

Sultana Mehwish, Tayyab Muhammad, Parveen Shakeela, Hussain Muhammad, Shafique Laiba

机构信息

Department of Zoology, Government Sadiq College Women University, Bahawalpur, 63100, Punjab, Pakistan.

Department of Zoology, Wildlife & Fisheries, University of Agriculture, Faisalabad, 38000, Punjab, Pakistan.

出版信息

Fish Physiol Biochem. 2024 Jun;50(3):843-864. doi: 10.1007/s10695-024-01337-2. Epub 2024 Apr 8.

Abstract

In the current investigation, a total of 42 full-length, non-redundant small heat shock proteins (sHsp) were detected in Cyprinus carpio, Labeo rohita, Danio rerio, Salmo salar, Oncorhynchus mykiss, and Clupea harengus. The sHsp genes were classified into three groups based on phylogenetic analysis. All the sHsps were shown to have higher aliphatic index values, which is an indication that these proteins are more thermally stable. The hydrophilic nature of sHsps was deduced from the fact that all fish species had negative GRAVY scores. In all of the representative fish species, sHsp genes were assigned to distinct chromosomes in an inconsistent and unequal manner. Segmental duplications are the main events that have contributed to the expansion of the sHsp genes in all species. We were also able to determine the selective pressure that was placed on particular codons and discovered several significant coding sites within the coding region of sHsps. Eventually, diversifying positive selection was found to be connected with evolutionary changes in sHsp proteins, which showed that gene evolution controlled the fish adaption event in response to environmental conditions. Clarification of the links between sHsps and environmental stress in fish will be achieved through rigorous genomic comparison, which will also yield substantial new insights.

摘要

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