微管蛋白α-1b 链被鉴定为一种泛癌的预后和免疫生物标志物,并在乳腺癌中进行了实验验证。

Tubulin alpha-1b chain was identified as a prognosis and immune biomarker in pan-cancer combing with experimental validation in breast cancer.

机构信息

Department of Breast Surgery, Center of Digestive and Vascular, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, 830054, China.

The First Clinical Medical College of Xinjiang Medical University, Urumqi, 830054, China.

出版信息

Sci Rep. 2024 Apr 8;14(1):8201. doi: 10.1038/s41598-024-58982-z.

Abstract

The α-tubulin subtype, Tubulin α-1b chain (TUBA1B), has been shown to influence immune cell infiltration, cancer growth, and survival across various malignancies. However, a comprehensive study has not yet been undertaken examining the immunological and predictive effects of TUBA1B in a pan-carcinoma context. Using data from TCGA, GEO, and other databases, we analyzed TUBA1B expression across various carcinoma types using transcriptional profiling, prognostic implications, genetic and epigenetic alterations, methylation patterns, and immunological significance. To validate our findings, we conducted Western blot analysis to assess TUBA1B protein levels in matched breast cancer tissue samples and performed CCK-8 proliferation assay, flow cytometry, transwell invasion, and migration assays to comprehensively examine the functional impact of TUBA1B on breast cancer cells. Our pan-cancer analysis found TUBA1B upregulation across most tumor types, with varying expression patterns in distinct immune and molecular subtypes. High TUBA1B expression was an independent risk factor and associated with poor prognoses in several cancers, including BRCA, KICH, LGG, LUAD, and MESO. TUBA1B also demonstrates moderate to high diagnostic accuracy in most tumor types. Increased m6A methylation levels were observed in the TUBA1B gene, while its promoter region displayed low methylation levels. TUBA1B's expression impacted some cancers by elevating tumor mutation burden, microsatellite instability, neoantigen formation, immune cell infiltration, and the modulation of immune checkpoints. Functional enrichment analysis highlights TUBA1B's involvement in important cellular processes such as the cell cycle, p53 signaling, cell senescence, programmed cell death, and the regulation of immune-related pathways. Moreover, our study reveals higher TUBA1B protein expression in breast cancer tissues compared to adjacent tissues. In vitro experiments confirm that TUBA1B deletion reduces breast cancer cell proliferation, invasion, and migration while increasing apoptosis. In conclusion, our study suggests that TUBA1B could potentially serve as a diagnostic marker for predicting cancer immunological profiles and survival outcomes and shed light on the expression and role of TUBA1B in breast cancer, providing a solid foundation for considering it as a promising therapeutic target for breast cancer patient treatment.

摘要

α-微管蛋白亚型 Tubulin α-1b 链(TUBA1B)已被证明可影响各种恶性肿瘤的免疫细胞浸润、癌症生长和存活。然而,尚未进行全面研究以检查 TUBA1B 在泛癌背景下的免疫学和预测作用。我们使用来自 TCGA、GEO 和其他数据库的数据,通过转录谱分析、预后意义、遗传和表观遗传改变、甲基化模式以及免疫学意义,分析了各种癌型中 TUBA1B 的表达。为了验证我们的发现,我们进行了 Western blot 分析以评估匹配的乳腺癌组织样本中的 TUBA1B 蛋白水平,并进行了 CCK-8 增殖测定、流式细胞术、transwell 侵袭和迁移测定,以全面研究 TUBA1B 对乳腺癌细胞的功能影响。我们的泛癌分析发现 TUBA1B 在大多数肿瘤类型中上调,在不同的免疫和分子亚型中表现出不同的表达模式。高 TUBA1B 表达是几个癌症(包括 BRCA、KICH、LGG、LUAD 和 MESO)的独立危险因素,与不良预后相关。TUBA1B 在大多数肿瘤类型中也具有中等至高的诊断准确性。在 TUBA1B 基因中观察到 m6A 甲基化水平升高,而其启动子区域显示低甲基化水平。TUBA1B 的表达通过提高肿瘤突变负担、微卫星不稳定性、新抗原形成、免疫细胞浸润和免疫检查点的调节来影响一些癌症。功能富集分析突出了 TUBA1B 参与细胞周期、p53 信号、细胞衰老、程序性细胞死亡和免疫相关途径调节等重要细胞过程。此外,我们的研究表明,与相邻组织相比,乳腺癌组织中的 TUBA1B 蛋白表达更高。体外实验证实,TUBA1B 缺失可降低乳腺癌细胞增殖、侵袭和迁移,同时增加细胞凋亡。总之,我们的研究表明 TUBA1B 可能作为预测癌症免疫图谱和生存结果的诊断标志物,并揭示了 TUBA1B 在乳腺癌中的表达和作用,为将其作为乳腺癌患者治疗的有前途的治疗靶点提供了坚实的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8565/11001892/ee9010ef1cc3/41598_2024_58982_Fig1_HTML.jpg

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