Univ. Lille, Inserm, CHU Lille, U1286 - INFINITE - Institute for Translational Research in Inflammation, F-59000, Lille, France.
Structural Genomics Consortium, University of Toronto, 101 College Street, MaRS South Tower, Suite 700, Toronto, Ontario M5G 1L7, Canada.
Curr Opin Struct Biol. 2024 Jun;86:102812. doi: 10.1016/j.sbi.2024.102812. Epub 2024 Apr 10.
Structure-based virtual screening can be a valuable approach to computationally select hit candidates based on their predicted interaction with a protein of interest. The recent explosion in the size of chemical libraries increases the chances of hitting high-quality compounds during virtual screening exercises but also poses new challenges as the number of chemically accessible molecules grows faster than the computing power necessary to screen them. We review here two novel approaches rapidly gaining in popularity to address this problem: machine learning-accelerated and synthon-based library screening. We summarize the results from seminal proof-of-concept studies, highlight the latest developments, and discuss limitations and future directions.
基于结构的虚拟筛选可以是一种有价值的方法,可以根据预测的与目标蛋白的相互作用来计算选择命中候选物。最近化学文库的规模不断扩大,增加了在虚拟筛选实验中命中高质量化合物的机会,但随着可化学合成分子的数量增长速度快于筛选它们所需的计算能力,也带来了新的挑战。在这里,我们回顾了两种新兴的方法来解决这个问题:机器学习加速和基于同系物的库筛选。我们总结了开创性概念验证研究的结果,突出了最新的发展,并讨论了局限性和未来的方向。