Research department, Alkermes, Inc, Waltham, MA, USA.
Expert Opin Drug Discov. 2024 Oct;19(10):1173-1183. doi: 10.1080/17460441.2024.2390511. Epub 2024 Aug 12.
For the past two decades, virtual screening (VS) has been an efficient hit finding approach for drug discovery. Today, billions of commercially accessible compounds are routinely screened, and many successful examples of VS have been reported. VS methods continue to evolve, including machine learning and physics-based methods.
The authors examine recent examples of VS in drug discovery and discuss prospective hit finding results from the critical assessment of computational hit-finding experiments (CACHE) challenge. The authors also highlight the cost considerations and open-source options for conducting VS and examine chemical space coverage and library selections for VS.
The advancement of sophisticated VS approaches, including the use of machine learning techniques and increased computer resources as well as the ease of access to synthetically available chemical spaces, and commercial and open-source VS platforms allow for interrogating ultra-large libraries (ULL) of billions of molecules. An impressive number of prospective ULL VS campaigns have generated potent and structurally novel hits across many target classes. Nonetheless, many successful contemporary VS approaches still use considerably smaller focused libraries. This apparent dichotomy illustrates that VS is best conducted in a fit-for-purpose way choosing an appropriate chemical space. Better methods need to be developed to tackle more challenging targets.
在过去的二十年中,虚拟筛选(VS)一直是药物发现的一种高效的命中发现方法。如今,数十亿种商业上可获得的化合物通常都会被筛选,并且已经有许多成功的 VS 案例被报道。VS 方法在不断发展,包括机器学习和基于物理的方法。
作者检查了药物发现中的最近的 VS 案例,并讨论了关键评估计算命中发现实验(CACHE)挑战的预期命中发现结果。作者还强调了进行 VS 的成本考虑因素和开源选项,并检查了 VS 的化学空间覆盖范围和库选择。
复杂的 VS 方法的进步,包括机器学习技术的使用、计算机资源的增加,以及对可合成化学空间、商业和开源 VS 平台的易于访问,允许对数十亿分子的超大型库(ULL)进行询问。许多有前途的 ULL VS 活动在许多靶标类别中产生了有效且结构新颖的命中。尽管如此,许多成功的当代 VS 方法仍然使用相当小的聚焦库。这种明显的二分法表明,VS 最好以适合目的的方式进行,选择适当的化学空间。需要开发更好的方法来解决更具挑战性的目标。