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新种,一种来自污水处理厂二沉池的 I 型甲烷氧化菌。

sp. nov., a type I methane-oxidizing bacterium from a secondary sedimentation tank of a wastewater treatment plant.

机构信息

Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Shanghai Cooperative Innovation Center for Modern Seed Industry, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, PR China.

People's Hospital, Hangzhou 310014, Zhejiang, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Apr;74(4). doi: 10.1099/ijsem.0.006321.

Abstract

An aerobic methanotroph was isolated from a secondary sedimentation tank of a wastewater treatment plant and designated strain OY6. Cells of OY6 were Gram-stain-negative, pink-pigmented, motile rods and contained an intracytoplasmic membrane structure typical of type I methanotrophs. OY6 could grow at a pH range of 4.5-7.5 (optimum pH 6.5) and at temperatures ranging from 20 °C to 37 °C (optimum 30 °C). The major cellular fatty acids were C, Cω7/Cω6 and Cω5; the predominant respiratory quinone was MQ-8. The genome size was 5.41 Mbp with a DNA G+C content of 51.7 mol%. OY6 represents a member of the family of the class and displayed 95.74-99.64 % 16S rRNA gene sequence similarity to the type strains of species of the genus . Whole-genome comparisons based on average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) confirmed that OY6 should be classified as representing a novel species. The most closely related type strain was EbB, with 16S rRNA gene sequence similarity, ANI by blast (ANIb), ANI by MUMmer (ANIm) and dDDH values of 99.64, 90.46, 91.92 and 44.5 %, respectively. OY6 possessed genes encoding both the particulate methane monooxygenase enzyme and the soluble methane monooxygenase enzyme. It grew only on methane or methanol as carbon sources. On the basis of phenotypic, genetic and phylogenetic data, strain OY6 represents a novel species within the genus for which the name sp. nov. is proposed, with strain OY6 (=GDMCC 1.4114=KCTC 8159=LMG 33371) as the type strain.

摘要

一株好氧甲烷营养菌从污水处理厂的二级沉淀池分离出来,被命名为 OY6 株。OY6 细胞革兰氏阴性,粉红色,运动棒状,含有典型的 I 型甲烷营养菌的细胞质膜结构。OY6 可在 pH 值为 4.5-7.5 之间生长(最佳 pH 值为 6.5),温度范围为 20-37°C(最佳温度为 30°C)。主要细胞脂肪酸为 C、Cω7/Cω6 和 Cω5;主要呼吸醌为 MQ-8。基因组大小为 5.41 Mbp,DNA G+C 含量为 51.7 mol%。OY6 代表 科的 属,其 16S rRNA 基因序列与属的种的模式菌株相似性为 95.74-99.64%。基于平均核苷酸同一性 (ANI) 和数字 DNA-DNA 杂交 (dDDH) 的全基因组比较证实,OY6 应归类为代表一个新种。最密切相关的模式菌株是 EbB,其 16S rRNA 基因序列相似性、blast 中的 ANI (ANIb)、MUMmer 中的 ANI (ANIm) 和 dDDH 值分别为 99.64、90.46、91.92 和 44.5%。OY6 拥有编码颗粒状甲烷单加氧酶和可溶性甲烷单加氧酶的基因。它只能以甲烷或甲醇作为碳源生长。根据表型、遗传和系统发育数据,OY6 株代表了属内的一个新种,提议使用 OY6 株(=GDMCC 1.4114=KCTC 8159=LMG 33371)作为模式株,命名为 sp. nov.。

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