Oshkin Igor Y, Belova Svetlana E, Danilova Olga V, Miroshnikov Kirill K, Rijpstra W Irene C, Sinninghe Damsté Jaap S, Liesack Werner, Dedysh Svetlana N
Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.
M.V. Lomonosov Moscow State University, Moscow 119991, Russia.
Int J Syst Evol Microbiol. 2016 Jun;66(6):2417-2423. doi: 10.1099/ijsem.0.001046. Epub 2016 Mar 31.
Two isolates of aerobic methanotrophic bacteria, strains Sph1T and Sph2, were obtained from cold methane seeps in a floodplain of the river Mukhrinskaya, Irtysh basin, West Siberia. Another morphologically and phenotypically similar methanotroph, strain OZ2, was isolated from a sediment of a subarctic freshwater lake, Archangelsk region, northern Russia. Cells of these three strains were Gram-stain-negative, light-pink-pigmented, non-motile, encapsulated, large cocci that contained an intracytoplasmic membrane system typical of type I methanotrophs. They possessed a particulate methane monooxygenase enzyme and utilized only methane and methanol. Strains Sph1T, Sph2 and OZ2 were able to grow at a pH range of 4.0-8.9 (optimum at pH 6.0-7.0) and at temperatures between 2 and 36 °C. Although their temperature optimum was at 20-25 °C, these methanotrophs grew well at lower temperatures, down to 4 °C. The major cellular fatty acids were C16 : 1ω5c, C16 : 1ω6c, C16 : 1ω7c, C16 : 1ω8c, C16 : 0 and C14 : 0; the DNA G+C content was 51.4-51.9 mol%. Strains Sph1T, Sph2 and OZ2 displayed nearly identical (99.1-99.7 % similarity) 16S rRNA gene sequences and belonged to the family Methylococcaceae of the class Gammaproteobacteria. The most closely related organism was Methylovulum miyakonense HT12T (96.0-96.5 % 16S rRNA gene sequence similarity and 90 % pmoA sequence similarity). The novel isolates, however, differed from Methylovulum miyakonense HT12T by cell morphology, pigmentation, absence of soluble methane monooxygenase, more active growth at low temperatures, growth over a broader pH range and higher DNA G+C content. On the basis of these differences, we propose a novel species, Methylovulum psychrotolerans sp. nov., to accommodate these methanotrophs. Strain Sph1T (=LMG 29227T=VKM B-3018T) is the type strain.
从西西伯利亚鄂毕河流域穆赫林斯卡亚河漫滩的冷甲烷渗漏处获得了两株需氧甲烷氧化细菌,即菌株Sph1T和Sph2。另一株形态和表型相似的甲烷氧化菌,菌株OZ2,是从俄罗斯北部阿尔汉格尔斯克地区一个亚北极淡水湖的沉积物中分离得到的。这三株菌的细胞革兰氏染色阴性,呈浅粉色,无运动性,有荚膜,为大型球菌,含有典型I型甲烷氧化菌的胞内膜系统。它们具有颗粒状甲烷单加氧酶,仅利用甲烷和甲醇。菌株Sph1T、Sph2和OZ2能够在pH值4.0 - 8.9的范围内生长(最适pH值为6.0 - 7.0),在2至36℃的温度下生长。尽管它们的最适温度为20 - 25℃,但这些甲烷氧化菌在较低温度下,低至4℃时也能良好生长。主要的细胞脂肪酸为C16 : 1ω5c、C16 : 1ω6c、C16 : 1ω7c、C16 : 1ω8c、C16 : 0和C14 : 0;DNA的G + C含量为51.4 - 51.9 mol%。菌株Sph1T、Sph2和OZ2显示出几乎相同(99.1 - 99.7%相似性)的16S rRNA基因序列,属于γ-变形菌纲甲基球菌科。与之亲缘关系最近的菌株是宫古甲基卵菌HT12T(16S rRNA基因序列相似性为96.0 - 96.5%,pmoA序列相似性为90%)。然而,这些新分离菌株在细胞形态、色素沉着、缺乏可溶性甲烷单加氧酶、在低温下生长更活跃、在更宽的pH范围内生长以及更高的DNA G + C含量等方面与宫古甲基卵菌HT12T不同。基于这些差异,我们提出一个新物种,耐冷甲基卵菌(Methylovulum psychrotolerans sp. nov.),以容纳这些甲烷氧化菌。菌株Sph1T(=LMG 29227T=VKM B - 3018T)为模式菌株。