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序列类型 147:一种高风险克隆株,越来越多地与同时携带耐药和毒力元件的质粒相关。

sequence type 147: a high-risk clone increasingly associated with plasmids carrying both resistance and virulence elements.

机构信息

HealthCare Associated Infections, Fungal, Antimicrobial Resistance, Antimicrobial Use and Sepsis Division, UK Health Security Agency, 61, Colindale Avenue, London NW9 5HT, UK.

Public Health Microbiology, UK Health Security Agency, 61, Colindale Avenue, London NW9 5HT, UK.

出版信息

J Med Microbiol. 2024 Apr;73(4). doi: 10.1099/jmm.0.001823.

Abstract

The first hybrid resistance/virulence plasmid, combining elements from virulence plasmids described in hypervirulent types of with those from conjugative resistance plasmids, was described in an isolate of sequence type (ST) 147 from 2016. Subsequently, this type has been increasingly associated with these plasmids. The extent of carriage of hybrid virulence/resistance plasmids in nosocomial isolates of requires further investigation. To describe the occurrence of virulence/resistance plasmids among isolates of received by the UK reference laboratory, particularly among representatives of ST147, and to compare their sequences. Isolates received by the laboratory during 2022 and the first half of 2023 (=1278) were screened for virulence plasmids by PCR detection of / and typed by variable-number tandem repeat analysis. Twenty-nine representatives of ST147 (including a single-locus variant) from seven hospital laboratories were subjected to long-read nanopore sequencing using high-accuracy q20 chemistry to provide complete assemblies. / were detected in 110 isolates, of which 59 belonged to hypervirulent K1-ST23, K2-ST86 and K2-ST65/375. Of the remainder, representatives of ST147 formed the largest group, with 22 /-positive representatives (out of 47 isolates). Representatives were from 19 hospital laboratories, with /-positive isolates from 10. Nanopore sequencing of 29 representatives of ST147 divided them into those with no virulence plasmid (=12), those with non-New Delhi metallo-β-lactamase (NDM) virulence plasmids (=6) and those carrying (=9) or (=2) virulence plasmids. These plasmids were of IncFIB(pNDM-Mar)/IncHI1B(pNDM-MAR) replicon types. Most of the non-NDM virulence plasmids were highly similar to the originally described KpvST147L_NDM plasmid. Those carrying were highly similar to one another and to previously described plasmids in ST383 and carried an extensive array of resistance genes. Comparison of the fully assembled chromosomes indicated multiple introductions of ST147 in UK hospitals. This study highlights the high proportion of representatives of ST147 that carry IncFIB(pNDM-Mar)/IncHI1B(pNDM-MAR) hybrid resistance virulence plasmids. It is important to be aware of the high probability that representatives of this type carry these plasmids combining resistance and virulence determinants and of the consequent increased risk to patients.

摘要

第一个结合了毒力质粒和接合性耐药质粒元件的杂交耐药/毒力质粒,是在 2016 年分离株中发现的,该分离株的序列类型(ST)为 147。此后,这种类型越来越多地与这些质粒有关。需要进一步研究医院分离株中携带杂交毒力/耐药质粒的程度。本研究旨在描述英国参考实验室收到的 分离株中毒力/耐药质粒的发生情况,特别是 ST147 代表株的情况,并比较其序列。实验室在 2022 年和 2023 年上半年(=1278)期间收到的分离株通过 PCR 检测 和 进行毒力质粒检测,并通过可变数量串联重复分析进行分型。来自七个医院实验室的 29 个 ST147 代表株(包括一个单一位点变体),用高准确度 q20 化学进行长读长纳米孔测序,以提供完整的组装。在 110 株分离株中检测到 /,其中 59 株属于高毒力 K1-ST23、K2-ST86 和 K2-ST65/375。其余的,ST147 的代表株形成了最大的组,其中有 22 株 /阳性代表株(在 47 株分离株中)。代表株来自 19 个医院实验室,其中有 /阳性分离株来自 10 个。ST147 的 29 个代表株的纳米孔测序将它们分为无毒力质粒组(=12)、非新德里金属β-内酰胺酶(NDM)毒力质粒组(=6)和携带 或 毒力质粒组(=9 或=2)。这些质粒的复制子类型为 IncFIB(pNDM-Mar)/IncHI1B(pNDM-MAR)。大多数非 NDM 毒力质粒与最初描述的 KpvST147L_NDM 质粒高度相似。携带 的质粒高度相似,与之前在 ST383 中描述的质粒相似,并携带广泛的耐药基因。完全组装染色体的比较表明,英国医院中 ST147 的多次引入。本研究强调了携带 IncFIB(pNDM-Mar)/IncHI1B(pNDM-MAR) 杂交耐药毒力质粒的 ST147 代表株的高比例。需要注意的是,这种类型的代表株携带结合了耐药和毒力决定因素的质粒的可能性很高,因此对患者的风险增加。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b33/11084618/79758ed3abb1/jmm-73-01823-g001.jpg

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