Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette 91190, France; Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette 91190, France.
Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette 91190, France; Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette 91190, France.
Plant Sci. 2024 Jul;344:112101. doi: 10.1016/j.plantsci.2024.112101. Epub 2024 Apr 17.
Over the last decade, the composition of the C-to-U RNA editing complex in embryophyte organelles has turned out to be much more complex than first expected. While PPR proteins were initially thought to act alone, significant evidences have clearly depicted a sophisticated mechanism with numerous protein-protein interaction involving PPR and non-PPR proteins. Moreover, the identification of specific functional partnership between PPRs also suggests that, in addition to the highly specific PPRs directly involved in the RNA target recognition, non-RNA-specific ones are required. Although some of them, such as DYW1 and DYW2, were shown to be the catalytic domains of the editing complex, the molecular function of others, such as NUWA, remains elusive. It was suggested that they might stabilize the complex by acting as a scaffold. We here performed functional complementation of the crr28-2 mutant with truncated CRR28 proteins mimicking PPR without the catalytic domain and show that they exhibit a specific dependency to one of the catalytic proteins DYW1 or DYW2. Moreover, we also characterized the role of the PPR NUWA in the editing reaction and show that it likely acts as a scaffolding factor. NUWA is no longer required for efficient editing of the CLB19 editing sites once this RNA specific PPR is fused to the DYW catalytic domain of its partner DYW2. Altogether, our results strongly support a flexible, evolutive and resilient editing complex in which RNA binding activity, editing activity and stabilization/scaffolding function can be provided by one or more PPRs.
在过去的十年中,植物细胞器中 C 到 U 的 RNA 编辑复合物的组成比最初预期的要复杂得多。虽然最初认为 PPR 蛋白是单独起作用的,但大量的蛋白质-蛋白质相互作用的证据清楚地描绘了一个复杂的机制,涉及 PPR 和非 PPR 蛋白。此外,特定的 PPR 功能伙伴关系的鉴定也表明,除了直接参与 RNA 靶标识别的高度特异性 PPR 之外,还需要非 RNA 特异性 PPR。虽然其中一些,如 DYW1 和 DYW2,被证明是编辑复合物的催化结构域,但其他如 NUWA 的分子功能仍然难以捉摸。有人认为它们可能通过作为支架来稳定复合物。我们在这里用模拟没有催化结构域的 PPR 的 CRR28 截断蛋白对 crr28-2 突变体进行了功能互补,并表明它们表现出对一种催化蛋白 DYW1 或 DYW2 的特异性依赖性。此外,我们还表征了 PPR NUWA 在编辑反应中的作用,并表明它可能作为一个支架因子。一旦这个 RNA 特异性 PPR 与它的伙伴 DYW2 的 DYW 催化结构域融合,它就不再需要 CLB19 编辑位点的有效编辑。总之,我们的结果强烈支持一个灵活、进化和有弹性的编辑复合物,其中 RNA 结合活性、编辑活性和稳定/支架功能可以由一个或多个 PPR 提供。