Yang Fan, Shen Junyi, Zhao Zhiming, Shang Wei, Cai Hui
Department of Chinese Medicine, Jinling Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, 210002, China.
Sci Rep. 2024 Apr 22;14(1):9166. doi: 10.1038/s41598-024-59907-6.
Rheumatoid arthritis (RA) is a persistent autoimmune condition characterized by synovitis and joint damage. Recent findings suggest a potential link to abnormal lactate metabolism. This study aims to identify lactate metabolism-related genes (LMRGs) in RA and investigate their correlation with the molecular mechanisms of RA immunity. Data on the gene expression profiles of RA synovial tissue samples were acquired from the gene expression omnibus (GEO) database. The RA database was acquired by obtaining the common LMRDEGs, and selecting the gene collection through an SVM model. Conducting the functional enrichment analysis, followed by immuno-infiltration analysis and protein-protein interaction networks. The results revealed that as possible markers associated with lactate metabolism in RA, KCNN4 and SLC25A4 may be involved in regulating macrophage function in the immune response to RA, whereas GATA2 is involved in the immune mechanism of DC cells. In conclusion, this study utilized bioinformatics analysis and machine learning to identify biomarkers associated with lactate metabolism in RA and examined their relationship with immune cell infiltration. These findings offer novel perspectives on potential diagnostic and therapeutic targets for RA.
类风湿性关节炎(RA)是一种以滑膜炎和关节损伤为特征的持续性自身免疫性疾病。最近的研究结果表明其与异常乳酸代谢存在潜在联系。本研究旨在鉴定RA中与乳酸代谢相关的基因(LMRGs),并研究它们与RA免疫分子机制的相关性。从基因表达综合数据库(GEO)获取RA滑膜组织样本的基因表达谱数据。通过获取常见的LMRDEGs并通过支持向量机(SVM)模型选择基因集来构建RA数据库。进行功能富集分析,随后进行免疫浸润分析和蛋白质-蛋白质相互作用网络分析。结果显示,作为RA中与乳酸代谢相关的可能标志物,KCNN4和SLC25A4可能参与调节RA免疫反应中巨噬细胞的功能,而GATA2参与树突状细胞的免疫机制。总之,本研究利用生物信息学分析和机器学习来鉴定RA中与乳酸代谢相关的生物标志物,并研究它们与免疫细胞浸润的关系。这些发现为RA潜在的诊断和治疗靶点提供了新的视角。