Lessa Milena D, Stoyanov Stanislav R, de Carneiro José Walkimar M, da Costa Leonardo M
Programa de Pós-Graduação Em Química, Departamento de Química Inorgânica e Departamento de Química Orgânica, Instituto de Química, Universidade Federal Fluminense, Outeiro de São João Batista S/N, Niterói, RJ, 24020-141, Brazil.
Natural Resources Canada, CanmetENERGY Devon, 1 Oil Patch Drive, Devon, AB, T9G 1A8, Canada.
J Mol Model. 2024 Apr 24;30(5):145. doi: 10.1007/s00894-024-05922-3.
A complex supramolecular process involving electrostatic and dispersion interactions and asphaltene aggregation is associated with detrimental petroleum deposition and scaling that pose challenges to petroleum recovery, transportation, and upgrading. The homodimers of seven heterocyclic model compounds, representative of moieties commonly found in asphaltene structures, were studied: pyridine, thiophene, furan, isoquinoline, pyrazine, thiazole, and 1,3-oxazole. The contributions of hydrogen bonding involving water bridges spanning between dimers and π-π stacking to the total interaction energy were calculated and analyzed. The distance between the planes of the aromatic rings is correlated with the π-π stacking interaction strength. All the dimerization reactions were exothermic, although not spontaneous. This was mostly modulated by the strength of the hydrogen bond of the water bridge and the π-π stacking interaction. Dimers bridged by two water molecules were more stable than those with additional water molecules or without any water molecule in the bridge. Energy decomposition analysis showed that the electrostatic and polarization components were the main stabilizing terms for the hydrogen bond interaction in the bridge, contributing at least 80% of the interaction energy in all dimers. The non-covalent interaction analysis confirmed the molecular sites that had the strongest (hydrogen bond) and weak (π-π stacking) attractive interactions. They were concentrated in the water bridge and in the plane between the aromatic rings, respectively.
The density functional ωB97X-D with a dispersion correction and the Def2-SVP basis set were employed to investigate supramolecular aggregates incorporating heterocycles dimers with 0, 1, 2, and 3 water molecules forming a stabilizing bridge connecting the monomers. The non-covalent interactions were analyzed using the NCIplot software and plotted as isosurface maps using Visual Molecular Dynamics.
一个涉及静电和色散相互作用以及沥青质聚集的复杂超分子过程与有害的石油沉积和结垢相关,这给石油开采、运输和升级带来了挑战。研究了七种杂环模型化合物的同二聚体,它们代表了沥青质结构中常见的部分:吡啶、噻吩、呋喃、异喹啉、吡嗪、噻唑和1,3-恶唑。计算并分析了涉及二聚体之间水桥的氢键和π-π堆积对总相互作用能的贡献。芳香环平面之间的距离与π-π堆积相互作用强度相关。所有二聚化反应都是放热的,尽管不是自发的。这主要由水桥氢键的强度和π-π堆积相互作用调节。由两个水分子桥连的二聚体比桥中含有额外水分子或没有任何水分子的二聚体更稳定。能量分解分析表明,静电和极化分量是桥中氢键相互作用的主要稳定项,在所有二聚体中贡献了至少80%的相互作用能。非共价相互作用分析确定了具有最强(氢键)和最弱(π-π堆积)吸引相互作用的分子位点。它们分别集中在水桥和芳香环之间的平面上。
采用具有色散校正的密度泛函ωB97X-D和Def2-SVP基组来研究包含杂环二聚体与0、1、2和3个水分子的超分子聚集体,这些水分子形成连接单体的稳定桥。使用NCIplot软件分析非共价相互作用,并使用可视化分子动力学将其绘制为等值面图。